PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO69536

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

SBP

Protein Properties

Length: 355aa MW: 39713.8 Da PI: 8.2361

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO69536	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	130.7	5.3e-41	171	248	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cq+egC+adl++ak+yhrrhkvCe+hska++v+++gl+qrfCqqCsrfh lsefD++krsCr+rLa+hn+rrrk+q+ OMO69536 171 RCQAEGCNADLTHAKHYHRRHKVCEFHSKASTVIAAGLTQRFCQQCSRFHLLSEFDNGKRSCRKRLADHNRRRRKSQQ 248 6**************************************************************************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 355 aa Download sequence
MLEYEWGNPP AIILSAEDPN QESDPNRQIF DHYATTTAQQ SFNDTLLSHQ TNTAFSHQNH 60 FHNPNQTQAQ PQPHAHLHSL YDPRAYSGAS TYSAPNPSLF SLDPVSGAGG SGGGYFLVPK 120 TEEVSRPVDF TARIGLNLGG RTYFSSAEDD FVNRLYRRSR PGDPSSTNSP RCQAEGCNAD 180 LTHAKHYHRR HKVCEFHSKA STVIAAGLTQ RFCQQCSRFH LLSEFDNGKR SCRKRLADHN 240 RRRRKSQQQQ PNNQENQKPV LLDNGRNTSS DNTPILFVGD SGGLTTANVV GLFQAKTSLQ 300 CNGIFIIVKH TFFLKWGEEV KQSSCLLDGG WPYPKQSYHE QNQSDVSNLS FLSLS

Sequence ? help Back to Top

Protein Sequence Length: 355 aa Download sequence

MLEYEWGNPP AIILSAEDPN QESDPNRQIF DHYATTTAQQ SFNDTLLSHQ TNTAFSHQNH  60
FHNPNQTQAQ PQPHAHLHSL YDPRAYSGAS TYSAPNPSLF SLDPVSGAGG SGGGYFLVPK  120
TEEVSRPVDF TARIGLNLGG RTYFSSAEDD FVNRLYRRSR PGDPSSTNSP RCQAEGCNAD  180
LTHAKHYHRR HKVCEFHSKA STVIAAGLTQ RFCQQCSRFH LLSEFDNGKR SCRKRLADHN  240
RRRRKSQQQQ PNNQENQKPV LLDNGRNTSS DNTPILFVGD SGGLTTANVV GLFQAKTSLQ  300
CNGIFIIVKH TFFLKWGEEV KQSSCLLDGG WPYPKQSYHE QNQSDVSNLS FLSLS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G02065.1	9e-82	SBP family protein

Link Out ? help Back to Top
Ensembl	OMO69536