PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO69196
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family M-type_MADS
Protein Properties Length: 351aa    MW: 38721 Da    PI: 9.3884
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO69196genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF45.41e-141152344
              --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS
    SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44
              i n+s r+ ++ kRr g++KK +ELS+LC++ +++i++s++ 
  OMO69196 11 IMNDSSRKASLKKRRLGLIKKVNELSILCGVPACMIMYSPDE 52
              789************************************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    
MTRKKVKLAW IMNDSSRKAS LKKRRLGLIK KVNELSILCG VPACMIMYSP DESQPTVWPS  60
SEVARYMIAR FRSMPEMEQL KKMMNQETYL RERFNKSQEQ VVKCHKKNRK AEMDHLMHQI  120
FNLGRPIDSL SMSEMSGLAW MADEQMKAIR KRIDYLHQSP FTPGTTPPPP FQPLPPPPQD  180
PSMADGTVQV GGGSGGFEPF PWDEWFVEYA NNNTELFKPP AGTKSSDNMG YHQYHPYDDH  240
FGGGSSSGVS VADMGTGSFL PGGSFKVTPT NMGLTDQFKA HGGSNNFGSY VTLSNMGQGL  300
NPFVGHPGAS SSGTAGTGQF GVPPTVIFKG NNNNNVFGPL PPYDGKNWPS P
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1325RKKVKLAWIMNDSSRKASLKKRR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.12e-37M-type_MADS family protein