PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO68794

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

NF-YB

Protein Properties

Length: 130aa MW: 14527.9 Da PI: 4.7187

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO68794	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	134.1	4.2e-42	1	81	17	97
NF-YB 17 mkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelegek 97 mk++lPa+akisk+ak+t+qec++efisfvt+easdkc++e+rkt+ngdd++wal+ lGf++y+e++ yl+kyre+e+ek OMO68794 1 MKQILPARAKISKEAKQTLQECATEFISFVTGEASDKCHKENRKTVNGDDICWALSALGFDNYAEAIVRYLHKYREAEREK 81 9*****************************************************************************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 130 aa Download sequence
MKQILPARAK ISKEAKQTLQ ECATEFISFV TGEASDKCHK ENRKTVNGDD ICWALSALGF 60 DNYAEAIVRY LHKYREAERE KANLNKLQAA ATCSSSQGKD IEEDQDQSSE DKNGAQQQAT 120 QQQEEEGTPN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09030.1	1e-48	NF-YB family protein

Link Out ? help Back to Top
Ensembl	OMO68794