PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO67527

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

FAR1

Protein Properties

Length: 584aa MW: 64988.7 Da PI: 6.4582

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO67527	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	47.1	7.7e-15	63	133	2	89
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 +Y+eYAk +GFs ++ +++++ +g+i+ r+fvC keg++++ ++ C+a l+++++ +kw+vtk+++eH+H++ OMO67527 63 YYDEYAKCMGFSAKVGQTRSK--DGTIIAREFVCGKEGFKRRPADS--------------CDALLMIELK-GDKWVVTKFVKEHSHSI 133 9*************98877..999**********998877..............******.9************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 584 aa Download sequence
MDVHVIDAEE GLGHRGMSDD GDAEPGEGGE ANNAENSLVH DEDGICEPYV GLEFNSDTAA 60 KSYYDEYAKC MGFSAKVGQT RSKDGTIIAR EFVCGKEGFK RRPADSCDAL LMIELKGDKW 120 VVTKFVKEHS HSILSPSKVH YLRPRRHFAG AAKTVADSCQ GVGVVPSGVI QYERAMEDWF 180 EREIEADYDT ICTTPVLRTP SPMEKQAADL YTRKIFTKFQ EELVETFVYT ANRIEGDGAI 240 STFRVAKFED DNKAYMVTLN YPEMRANCSC QMFEYSGILC RHVLTVFTVT NVLTLPPHYI 300 LKRWTRNAKS SGVGTDERST ESQGQETLTR RYSSLCREAI KYAEEGAIAT ETYNVAMGAL 360 KEGGKKIAVM KKNVAKVAPP GSQASGATHD DKKSSTSAPD TVPLLWPRQD EVTRRFNLND 420 TGTPAQSVSD SNLPRMAPVS LHRDDGHPDN MPVLPCLKSM TWVMEKNLAH GRRVAVINLK 480 LQDYSKNPSA EMEVKFQLSK LTLEPMLRSM AYISEQLSTP ANKVAVINLK LQDAETPTGE 540 SEVKFQVSRD TLGAMLRSMA YIREQLSVVV TELQSEPLPK KQRK

Sequence ? help Back to Top

Protein Sequence Length: 584 aa Download sequence

MDVHVIDAEE GLGHRGMSDD GDAEPGEGGE ANNAENSLVH DEDGICEPYV GLEFNSDTAA  60
KSYYDEYAKC MGFSAKVGQT RSKDGTIIAR EFVCGKEGFK RRPADSCDAL LMIELKGDKW  120
VVTKFVKEHS HSILSPSKVH YLRPRRHFAG AAKTVADSCQ GVGVVPSGVI QYERAMEDWF  180
EREIEADYDT ICTTPVLRTP SPMEKQAADL YTRKIFTKFQ EELVETFVYT ANRIEGDGAI  240
STFRVAKFED DNKAYMVTLN YPEMRANCSC QMFEYSGILC RHVLTVFTVT NVLTLPPHYI  300
LKRWTRNAKS SGVGTDERST ESQGQETLTR RYSSLCREAI KYAEEGAIAT ETYNVAMGAL  360
KEGGKKIAVM KKNVAKVAPP GSQASGATHD DKKSSTSAPD TVPLLWPRQD EVTRRFNLND  420
TGTPAQSVSD SNLPRMAPVS LHRDDGHPDN MPVLPCLKSM TWVMEKNLAH GRRVAVINLK  480
LQDYSKNPSA EMEVKFQLSK LTLEPMLRSM AYISEQLSTP ANKVAVINLK LQDAETPTGE  540
SEVKFQVSRD TLGAMLRSMA YIREQLSVVV TELQSEPLPK KQRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G27110.2	0.0	FAR1 family protein

Link Out ? help Back to Top
Ensembl	OMO67527