PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO67335

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

HRT-like

Protein Properties

Length: 518aa MW: 57508.6 Da PI: 9.2179

Description

HRT-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO67335	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HRT-like	56.7	4e-18	259	288	1	30
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmR 30 +CGv l+dGs+C+r+Pv gRKRC+eHKG++ OMO67335 259 TCGVVLGDGSICRRPPVDGRKRCAEHKGKK 288 7***************************98 PP
2	HRT-like	57.6	2e-18	348	377	1	30
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmR 30 iCGv+++dGs+C+rqPvkgRKRC HKGm+ OMO67335 348 ICGVAMDDGSICSRQPVKGRKRCNVHKGMK 377 8****************************7 PP
3	HRT-like	54.3	2.3e-17	435	465	1	31
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 iCGv l++G +C++qPvkgR RCeeHKG R+ OMO67335 435 ICGVELGNGCFCTNQPVKGRVRCEEHKGLRV 465 8*****************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 518 aa Download sequence
MAAAKLAVVS SRLKREDHKR TKHDSQFSKW KVLIGPDDWE DYSAGKEGVS RYRVENLPRS 60 SSSGLYELAI NRTGSSSREK SGKFDLDKVL VVYLGEADNV KTRLQQYGRT GAHLGRSSSG 120 EKGCGCFEDV FSRGYSILYR WAPMENKAEA YRTEAQLLNT FDYAWNKGSN GARRHDDILQ 180 KLDKGVSNSN PLAIFSRKLL PFRQKQVGIK IKASKLVSQD DDFGNSEGYS FLSQVFKFSR 240 SQPRLVLDHG GSDENETITC GVVLGDGSIC RRPPVDGRKR CAEHKGKKTK GSSVRVNTSE 300 KSELHKACSE YAVSNNLEFD IYGEIPNFAA IPSLIAGESP AIEHYSPICG VAMDDGSICS 360 RQPVKGRKRC NVHKGMKKCN FKSETTRYQA VPDLLFDSYA NDALNFDKNS EILIPGKVET 420 GVAPCRPVNE GCNTICGVEL GNGCFCTNQP VKGRVRCEEH KGLRVTSLTP HAFDADSNYN 480 SYNWNYGSRS VSKCGAPTRN GSYCRRTVNG NRKCWQHS

Sequence ? help Back to Top

Protein Sequence Length: 518 aa Download sequence

MAAAKLAVVS SRLKREDHKR TKHDSQFSKW KVLIGPDDWE DYSAGKEGVS RYRVENLPRS  60
SSSGLYELAI NRTGSSSREK SGKFDLDKVL VVYLGEADNV KTRLQQYGRT GAHLGRSSSG  120
EKGCGCFEDV FSRGYSILYR WAPMENKAEA YRTEAQLLNT FDYAWNKGSN GARRHDDILQ  180
KLDKGVSNSN PLAIFSRKLL PFRQKQVGIK IKASKLVSQD DDFGNSEGYS FLSQVFKFSR  240
SQPRLVLDHG GSDENETITC GVVLGDGSIC RRPPVDGRKR CAEHKGKKTK GSSVRVNTSE  300
KSELHKACSE YAVSNNLEFD IYGEIPNFAA IPSLIAGESP AIEHYSPICG VAMDDGSICS  360
RQPVKGRKRC NVHKGMKKCN FKSETTRYQA VPDLLFDSYA NDALNFDKNS EILIPGKVET  420
GVAPCRPVNE GCNTICGVEL GNGCFCTNQP VKGRVRCEEH KGLRVTSLTP HAFDADSNYN  480
SYNWNYGSRS VSKCGAPTRN GSYCRRTVNG NRKCWQHS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56780.1	1e-109	HRT-like family protein

Link Out ? help Back to Top
Ensembl	OMO67335