PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO67154

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

ARF

Protein Properties

Length: 1141aa MW: 127770 Da PI: 6.5439

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO67154	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	73	3.6e-23	126	227	1	99
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 f+k+lt sd++++g +++p++ ae++ +++++ ++l+ +d++ +sW++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F ++++ +l+++ OMO67154 126 FCKTLTASDTSTHGGFSVPRRAAEKIfppldySMQPPA-QELVARDLHDNSWTFRHIYRGQPKRHLLTTGWSVFVSTKRLFAGDSVLFI--RDEKSQLLLG 223 99***************************9545444.38**********************************************..4567778999 PP EE-S CS B3 96 vfrk 99 ++r+ OMO67154 224 IRRA 227 9997 PP
2	Auxin_resp	125.1	4.7e-41	252	334	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+++s+F+++YnPras+seFv++++k++ka++++vs+GmRf+m+fete+s rr++Gt++g+sdldpvrW+nS+Wr+L+ OMO67154 252 AAHAAANNSPFTIFYNPRASPSEFVIPLAKYNKAMYTQVSLGMRFRMMFETEESGVRRYMGTITGISDLDPVRWKNSQWRNLQ 334 79*******************************************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 1141 aa Download sequence
MKAPPNGFLA NSGEGERKSI NSELWHACAG PLVSLPPVGS LVVYFPQGHS EQVAASMQKE 60 ADFIPSYPNL PSKLICMLHN VTLHADPETD EVYAQMTLQP VNKYDKEALL ASDMGLKQNR 120 QPTEFFCKTL TASDTSTHGG FSVPRRAAEK IFPPLDYSMQ PPAQELVARD LHDNSWTFRH 180 IYRGQPKRHL LTTGWSVFVS TKRLFAGDSV LFIRDEKSQL LLGIRRANRQ QPALSSSVIS 240 SDSMHIGILA AAAHAAANNS PFTIFYNPRA SPSEFVIPLA KYNKAMYTQV SLGMRFRMMF 300 ETEESGVRRY MGTITGISDL DPVRWKNSQW RNLQVGWDES TAGERPSRVS IWEVEPVVTP 360 FYICPPPFFR PRFPKQPGMP DDESDVENAF KRAMPWLGDD FGMKDAPSSI FPGLSLVQWM 420 SMQQNNQFPA AQSGFFPSMV SSNPLHNNLS TDDPSKLLNF QASALPASNM QFNKTNPNQI 480 NQLPQAPMTW PQQQQLQQLL QSPLNQHQQQ QSQQQLQRQQ SQQPQQPQQP QQQPQHLLHQ 540 QQPQPQQQQQ QQQQQQQQQH QQQQQQQQRQ QPQPQQQLQQ AFLPAQVNNG IIAPNQMPNQ 600 NLHQPAVYSQ LQQQQLLTSN GQSTQAILAA NKASHPLTSL PQDTQIQQQI EQQPNLVHRQ 660 QQQTQMQQSP LQLLQQSLSQ RTQQQPQIQQ LSQQGLSEQQ LQLQLLQKLQ QQQQLQQQQQ 720 QQQQQSSQQL LSPAGSLLQP PMVQQQQAHQ QSQQLQQLPL SQSQPQPLGS NGLSTSTFMQ 780 PQQVSVNQPQ SQNKPLMPMR THSGLTDGDA PSCSTSPSTN NCQVSPSNFL NRSQQTPSIL 840 VTDPVVEASN PMAQELQSKP DIRIKHELPS SRGPDQSSKY RSTVTDQLEA SSSGTSYCLD 900 AGTIQHNFSL PTFLEGDVQS NPRNNLPFTA NIDGLAPDTL LSRGFDSQKD LQNLLSNYGG 960 TPRDIDTELS TAISSQSFGV PNIPFKTGCS NDVSINETGV LNGGLWANQT QRMRTYTKVQ 1020 KRGSVGRSID VTRYKGYDEL RHDLARMFGI EGQLEDPQSS DWKLVYVDHE NDILLVGDDP 1080 WEEFVSCVQS IKILSSAEVQ QMSLDGDLGN VAVPNQACSG TDSGNAWRGH YDDTSAASFN 1140 R

Sequence ? help Back to Top

Protein Sequence Length: 1141 aa Download sequence

MKAPPNGFLA NSGEGERKSI NSELWHACAG PLVSLPPVGS LVVYFPQGHS EQVAASMQKE  60
ADFIPSYPNL PSKLICMLHN VTLHADPETD EVYAQMTLQP VNKYDKEALL ASDMGLKQNR  120
QPTEFFCKTL TASDTSTHGG FSVPRRAAEK IFPPLDYSMQ PPAQELVARD LHDNSWTFRH  180
IYRGQPKRHL LTTGWSVFVS TKRLFAGDSV LFIRDEKSQL LLGIRRANRQ QPALSSSVIS  240
SDSMHIGILA AAAHAAANNS PFTIFYNPRA SPSEFVIPLA KYNKAMYTQV SLGMRFRMMF  300
ETEESGVRRY MGTITGISDL DPVRWKNSQW RNLQVGWDES TAGERPSRVS IWEVEPVVTP  360
FYICPPPFFR PRFPKQPGMP DDESDVENAF KRAMPWLGDD FGMKDAPSSI FPGLSLVQWM  420
SMQQNNQFPA AQSGFFPSMV SSNPLHNNLS TDDPSKLLNF QASALPASNM QFNKTNPNQI  480
NQLPQAPMTW PQQQQLQQLL QSPLNQHQQQ QSQQQLQRQQ SQQPQQPQQP QQQPQHLLHQ  540
QQPQPQQQQQ QQQQQQQQQH QQQQQQQQRQ QPQPQQQLQQ AFLPAQVNNG IIAPNQMPNQ  600
NLHQPAVYSQ LQQQQLLTSN GQSTQAILAA NKASHPLTSL PQDTQIQQQI EQQPNLVHRQ  660
QQQTQMQQSP LQLLQQSLSQ RTQQQPQIQQ LSQQGLSEQQ LQLQLLQKLQ QQQQLQQQQQ  720
QQQQQSSQQL LSPAGSLLQP PMVQQQQAHQ QSQQLQQLPL SQSQPQPLGS NGLSTSTFMQ  780
PQQVSVNQPQ SQNKPLMPMR THSGLTDGDA PSCSTSPSTN NCQVSPSNFL NRSQQTPSIL  840
VTDPVVEASN PMAQELQSKP DIRIKHELPS SRGPDQSSKY RSTVTDQLEA SSSGTSYCLD  900
AGTIQHNFSL PTFLEGDVQS NPRNNLPFTA NIDGLAPDTL LSRGFDSQKD LQNLLSNYGG  960
TPRDIDTELS TAISSQSFGV PNIPFKTGCS NDVSINETGV LNGGLWANQT QRMRTYTKVQ  1020
KRGSVGRSID VTRYKGYDEL RHDLARMFGI EGQLEDPQSS DWKLVYVDHE NDILLVGDDP  1080
WEEFVSCVQS IKILSSAEVQ QMSLDGDLGN VAVPNQACSG TDSGNAWRGH YDDTSAASFN  1140
R

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G19220.1	0.0	ARF family protein

Link Out ? help Back to Top
Ensembl	OMO67154