PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OMO67022 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 177aa MW: 20543.5 Da PI: 8.0628 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 49.8 | 4.3e-16 | 10 | 54 | 1 | 45 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 +r en rq +skR+ gi KK +E+ vLCd++va++++s+t k OMO67022 10 ERLENMKARQAKYSKRKRGIVKKVKEIAVLCDVDVALLLISPTEK 54 5789*************************************9975 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 177 aa Download sequence |
MGRRTKQKLE RLENMKARQA KYSKRKRGIV KKVKEIAVLC DVDVALLLIS PTEKPTVVVG 60 KDKDLSTVIE RMSRMRLEER EDRCWKKCME NPTTSSSRLI QETHPKSKIP LHEDQLSELK 120 ETIAKKNKIL SDWRNPTNIE DLAQLNIMEE HIQYSEADQL EQQGREEGAE GTDDLET |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G26320.1 | 6e-12 | M-type_MADS family protein |
Link Out ? help Back to Top | |
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Ensembl | OMO67022 |