PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT2G26320.1 | ||||||||
Common Name | AGL33 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 109aa MW: 12975.5 Da PI: 10.7686 | ||||||||
Description | AGAMOUS-like 33 | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 55.2 | 8.9e-18 | 25 | 69 | 1 | 45 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 krie+ r+ fskR++g++KKAeE+ LCd ++ +i++s+t k AT2G26320.1 25 KRIESLKERSSKFSKRKKGLFKKAEEVALLCDSDIMLIVVSPTEK 69 79****************************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 5.4E-27 | 17 | 76 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 21.754 | 17 | 77 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 4.71E-22 | 17 | 95 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 1.53E-22 | 18 | 100 | No hit | No description |
PRINTS | PR00404 | 1.4E-14 | 19 | 39 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 7.9E-18 | 26 | 73 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.4E-14 | 39 | 54 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.4E-14 | 54 | 75 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 109 aa Download sequence Send to blast |
MKRTIKNKNK QIVKENMGRK KLKLKRIESL KERSSKFSKR KKGLFKKAEE VALLCDSDIM 60 LIVVSPTEKP TVFNTRSRSF HTILERFCML SLQEREERCD LSYFYIIIT |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 18401093 | 0.0 | ||||
Genevisible | 267403_at | 1e-131 | ||||
Expression Atlas | AT2G26320 | - | ||||
AtGenExpress | AT2G26320 | - | ||||
ATTED-II | AT2G26320 | - |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT2G26320.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT2G26320 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY141233 | 0.0 | AY141233.1 Arabidopsis thaliana MADS-box protein AGL33 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_180200.1 | 6e-73 | AGAMOUS-like 33 | ||||
TrEMBL | O64840 | 1e-71 | O64840_ARATH; AGAMOUS-like 33 | ||||
STRING | AT2G26320.1 | 2e-72 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7330 | 18 | 38 | Representative plant | OGRP16 | 17 | 761 |
Link Out ? help Back to Top | |
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Phytozome | AT2G26320.1 |
Entrez Gene | 817172 |
iHOP | AT2G26320 |
wikigenes | AT2G26320 |