PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO66927

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

TALE

Protein Properties

Length: 588aa MW: 64833.6 Da PI: 5.3572

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO66927	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	25.9	1.7e-08	507	545	18	54
HHHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 18 lFek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 +F++ ++yp+ +e+ LA k gLt +qV++WF N R + OMO66927 507 MFQNflHPYPKDAEKHLLAIKSGLTRSQVSNWFINARVR 545 5887779******************************88 PP
2	BELL	79.9	3.5e-26	381	449	3	72
BELL 3 qelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 ++ ++k+++Ll ll+ Vd+rY+q+ ++++tvis+F+a+++l++ ++++++Al++iS+ +++L+++i++qi OMO66927 381 RAAEAKRTQLLALLQVVDDRYSQCLDEIHTVISAFHAATELDP-QVHARFALQTISFLYKNLRERISNQI 449 67899************************************.***********************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 588 aa Download sequence
MENDMFSVPR AMVSRYPVVI DEIPSQTVPN SIPESNSFNL ISQNQMLAGF PVLPSAQGEF 60 ISDLCADLHI TNRARFFDSN ASLVTSLGRN VVCDASPSLG DSGSEVNIEV QEHFMGRTPI 120 PSTPPAKCAP QENLNEMAIA APSIYPLDFR TYTSTECSDG LNSSLVTSVN SVFNEALGNF 180 TSKWDFDKFP APLELVGKPP SRTAFQPFSS MGCADPNGWI SSNEANMSID YPCGPSKHSN 240 ELSLSLATSL PAVISGNGIP DQSSEINCSG ANHGCSSTTR LGSEQTSSNA RELSLSFGSY 300 GSVQVSHLIS GSRYLHGVQE ILAQLASYSL ENLDQVSVAG GTTPFSSSCI AGRGMPLMDP 360 NELLDVTGNS EVQLEPEVRN RAAEAKRTQL LALLQVVDDR YSQCLDEIHT VISAFHAATE 420 LDPQVHARFA LQTISFLYKN LRERISNQIL AMGANFDSGS TGGREKSFQD TFIQEQWALQ 480 QLKKKDQLWR PQRGLPEKSV SVLRAWMFQN FLHPYPKDAE KHLLAIKSGL TRSQVSNWFI 540 NARVRLWKPM IEEMYSEMNR RKARQNEEGT NSNQRSQMSI NNQRFNFN

Sequence ? help Back to Top

Protein Sequence Length: 588 aa Download sequence

MENDMFSVPR AMVSRYPVVI DEIPSQTVPN SIPESNSFNL ISQNQMLAGF PVLPSAQGEF  60
ISDLCADLHI TNRARFFDSN ASLVTSLGRN VVCDASPSLG DSGSEVNIEV QEHFMGRTPI  120
PSTPPAKCAP QENLNEMAIA APSIYPLDFR TYTSTECSDG LNSSLVTSVN SVFNEALGNF  180
TSKWDFDKFP APLELVGKPP SRTAFQPFSS MGCADPNGWI SSNEANMSID YPCGPSKHSN  240
ELSLSLATSL PAVISGNGIP DQSSEINCSG ANHGCSSTTR LGSEQTSSNA RELSLSFGSY  300
GSVQVSHLIS GSRYLHGVQE ILAQLASYSL ENLDQVSVAG GTTPFSSSCI AGRGMPLMDP  360
NELLDVTGNS EVQLEPEVRN RAAEAKRTQL LALLQVVDDR YSQCLDEIHT VISAFHAATE  420
LDPQVHARFA LQTISFLYKN LRERISNQIL AMGANFDSGS TGGREKSFQD TFIQEQWALQ  480
QLKKKDQLWR PQRGLPEKSV SVLRAWMFQN FLHPYPKDAE KHLLAIKSGL TRSQVSNWFI  540
NARVRLWKPM IEEMYSEMNR RKARQNEEGT NSNQRSQMSI NNQRFNFN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G32980.1	1e-115	TALE family protein

Link Out ? help Back to Top
Ensembl	OMO66927