PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO64539

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

Trihelix

Protein Properties

Length: 356aa MW: 39367.7 Da PI: 10.1001

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO64539	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	51.5	2.7e-16	55	138	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W++ v L+ea+++++ +r+klk+++We+v++++ ++ ++++qCk+k+e+++kry+ + +++ + s++p++ +l+ OMO64539 55 EWSEGAVSSLLEAYENKWVLRNRAKLKGHDWEDVARYVsaraNCTKSPKTQTQCKNKIESMKKRYRSESATADG------SSWPLYPRLD 138 5***********************************844444455556679**************99997......4699999986 PP

Sequence ? help Back to Top
Protein Sequence Length: 356 aa Download sequence
MDKETNQENP SLLSNNTTTN NIIKEDISPK KHHHPAVIGG AGGGGGGNDR LKRDEWSEGA 60 VSSLLEAYEN KWVLRNRAKL KGHDWEDVAR YVSARANCTK SPKTQTQCKN KIESMKKRYR 120 SESATADGSS WPLYPRLDLL LRGSAPPPPP PPQPQPQLHP SAVPQAPIPL ASNPPLTLPE 180 QSMVVVLQQQ PTPPPPAAAP PPPPLAPHGT AQNSHGSNGV DRIPKEDGAG TKLSDHLSDK 240 FAMETDSSTP ALYSDKEKLR SKKMKMKMEK KKRRKKEEWE IAESIRWLAE VVLKSEQARM 300 ETMREIEKMR VEAEAKRGEM DLKRTEIIAN TQLEIARLFA GSSKGSVDSS LRIGRS

Sequence ? help Back to Top

Protein Sequence Length: 356 aa Download sequence

MDKETNQENP SLLSNNTTTN NIIKEDISPK KHHHPAVIGG AGGGGGGNDR LKRDEWSEGA  60
VSSLLEAYEN KWVLRNRAKL KGHDWEDVAR YVSARANCTK SPKTQTQCKN KIESMKKRYR  120
SESATADGSS WPLYPRLDLL LRGSAPPPPP PPQPQPQLHP SAVPQAPIPL ASNPPLTLPE  180
QSMVVVLQQQ PTPPPPAAAP PPPPLAPHGT AQNSHGSNGV DRIPKEDGAG TKLSDHLSDK  240
FAMETDSSTP ALYSDKEKLR SKKMKMKMEK KKRRKKEEWE IAESIRWLAE VVLKSEQARM  300
ETMREIEKMR VEAEAKRGEM DLKRTEIIAN TQLEIARLFA GSSKGSVDSS LRIGRS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	262	273	KKMKMKMEKKKR
2	263	276	KMKMKMEKKKRRKK
3	270	274	KKKRR
4	270	275	KKKRRK
5	270	276	KKKRRKK
6	271	275	KKRRK
7	271	276	KKRRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54390.1	1e-104	Trihelix family protein

Link Out ? help Back to Top
Ensembl	OMO64539