PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO64465
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family bHLH
Protein Properties Length: 365aa    MW: 40224.6 Da    PI: 4.743
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO64465genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.82.5e-102913311055
               HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
       HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
               r+RR+riN+++  L+ l+P+      +K++ +++Le+Av+Y+k Lq
  OMO64465 291 RKRRERINERLRILQNLVPNG-----TKVDISTMLEEAVHYVKFLQ 331
               9******************97.....8******************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    
MESLAAFPAG GEWDCSFNRM YEELEFTQQV LQQFSFPGDE GLSFMNPVVA FCPNPEANMS  60
TISEINESNL LYSPNALHDS NFHYNSQESS QSSNSSGSVF VSPPIHDQAY FHSNDHVAAT  120
TDHMMTMDIS MDIAAGGEAF PNIAMALNNV IEDSSTDSLG NSDISQPAAN IVLADELLLK  180
RKLQVLELHA QGDDHTMINN NNSSDNSKKR PRLPKNAPRK KNRKMNVNGN EGENNIGSDG  240
QSSSTCSSED EIVSQDNING SDSKSSPALN LNGKTRATRG SATDPQSLYA RKRRERINER  300
LRILQNLVPN GTKVDISTML EEAVHYVKFL QLQIKLLSSD DLWMYAPIAY NGVDVGLNRK  360
ISTLL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1208221KKRPRLPKNAPRKK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G14760.13e-45bHLH family protein