PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO63625
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family WRKY
Protein Properties Length: 379aa    MW: 41396.2 Da    PI: 6.4226
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO63625genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY86.52.4e-27191251259
               --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
      WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
               +D y+WrKYGqKe+ gs++pr+YYrCt++   +C++kk+v+r ++d +++e+tY g+H+++
  OMO63625 191 EDNYTWRKYGQKEILGSRYPRAYYRCTHQkmyNCHAKKQVQRLDNDFNTFEVTYIGQHTCH 251
               7***************************9999***************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 379 aa     Download sequence    
MEETLHLILQ GCKLAKDLES NLGNLANQPE ILSKSCEEII TIFAIAKQRL INNAQEAAAL  60
FTQREAQTSL QQQQQQQSTG DPSLQEWLKY GTVISQAMGM IQQQYLAAGG KTAPFEISEM  120
GGKNMMEGSS SAASSRLKSS MGGEIQAMDV SDSGRASSSS SQRSRRRKDD DEKHIMTVPA  180
PQMGNTDLPP EDNYTWRKYG QKEILGSRYP RAYYRCTHQK MYNCHAKKQV QRLDNDFNTF  240
EVTYIGQHTC HMSSTAPSIP PPPPPPLAQD HHHQMMMATQ SMVTQQSTPA SSSSIPLGRW  300
LSMEFSLGTS ASGGSAGSSG GAGGSTTTAA TRYGRDVVDY PVVADMADVM FNSGSSSSNS  360
MDFIFPSVDD KWETGDKKN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40740.14e-48WRKY family protein