PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO62604
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family GRAS
Protein Properties Length: 495aa    MW: 54457.1 Da    PI: 5.0417
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO62604genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS340.43e-1041044891374
      GRAS   1 lvelLlecAeavssgdle..laqalLarlselaspdg.dpmqRlaayfteALaarlarsv.......se.lykalppsetseknsseelaalklfsevsPi 90 
               lv+lL+++Aea++  +++  la+ +L rl+el+sp++ ++m+Rlaayft AL+  l +s+       ++ + +   p + ++++++++laa++l++++sP+
  OMO62604 104 LVHLLMAAAEALTGANKSreLARVILVRLKELVSPNDgTNMERLAAYFTDALQGLLEGSSggggghgKHfITNGPGPHHRDDQHQTDVLAAFQLLQDMSPY 204
               68**********986665559***********8887669*****************9954222222223133333455555666***************** PP

      GRAS  91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp..slRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrle 187
               +kf+h+taNqaIleav++++r+HiiD+di++G+QW++L+qaL sR+egpp  +lRiT++++  +g  s  +++etg+rL  fA+++g pf+f+    ++ e
  OMO62604 205 VKFGHFTANQAILEAVSHDRRIHIIDYDIMEGIQWASLMQALVSRKEGPPtpHLRITAISRGGNGrrSIGTIQETGRRLVAFAASIGQPFSFHQCRLDSDE 305
               **********************************************887666*********888898999************************9999*** PP

      GRAS 188 dleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh.nsesFlerflealeyysalfdsleaklpreseerikvEr 287
               ++++++ ++ +gEal++n++l+l ++       ++   ++L+  k+l+P++v++ve+e+   +++ F+ rf+++l++ysa++dslea++p +s++r+ vEr
  OMO62604 306 TFRPSAVKLVRGEALIINCMLHLPHFSY---RCPDSVASFLSGAKTLNPRLVTLVEEEVGPiGDGGFVGRFMDSLHHYSAVYDSLEAGFPMQSRARALVER 403
               *************************984...44444569*******************9988*************************************** PP

      GRAS 288 ellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee.sgslvlgWkdrpLvsvSaWr 374
               ++lg++i   +a   ++    +e+ + W+e+l+++G+k v++s  + +qaklll  ++ dgyrvee  ++ lvlgWk+r+L+s+S W+
  OMO62604 404 VFLGPKIAGSLARIYRS-GGGEEESSPWSEWLGAMGLKGVNISFANHCQAKLLLGLFN-DGYRVEELaNNRLVLGWKSRRLLSASIWT 489
               **************998.7778889*********************************.******97588999**************6 PP
Sequence ? help Back to Top
Protein Sequence    Length: 495 aa     Download sequence    
MAMAIDNTFE VDFSSYTYST TTTTTTEDDF ACNWNDWESP VVDWDSFSRE RDEFQDLIES  60
MMDDDGTAIG IAPEISNNSV STDTSMAVDE ESLSNGEDFK GLRLVHLLMA AAEALTGANK  120
SRELARVILV RLKELVSPND GTNMERLAAY FTDALQGLLE GSSGGGGGHG KHFITNGPGP  180
HHRDDQHQTD VLAAFQLLQD MSPYVKFGHF TANQAILEAV SHDRRIHIID YDIMEGIQWA  240
SLMQALVSRK EGPPTPHLRI TAISRGGNGR RSIGTIQETG RRLVAFAASI GQPFSFHQCR  300
LDSDETFRPS AVKLVRGEAL IINCMLHLPH FSYRCPDSVA SFLSGAKTLN PRLVTLVEEE  360
VGPIGDGGFV GRFMDSLHHY SAVYDSLEAG FPMQSRARAL VERVFLGPKI AGSLARIYRS  420
GGGEEESSPW SEWLGAMGLK GVNISFANHC QAKLLLGLFN DGYRVEELAN NRLVLGWKSR  480
RLLSASIWTS TDSDL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.11e-152GRAS family protein