PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO62288
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family GeBP
Protein Properties Length: 281aa    MW: 31316.5 Da    PI: 4.2121
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO62288genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573842e-26132213276
    DUF573   2 lfqrlwseeDeivlLqGlidfkaktgk.......spsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgk 76 
               lfqrlw++eDei lLqG++d+ +++ +       + ++d+  fy+++k++++++++k+qlveK+rrLKkK+++ ++k++sg+
  OMO62288 132 LFQRLWTDEDEIELLQGFLDYSTSKMTsnsssshHHHHDTALFYDQIKSKLQLDFNKNQLVEKLRRLKKKYRNVMNKISSGR 213
               79*******************888877666644334459999***********************************98886 PP
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    
MASEQYDGVF EESQDDDEEP SSSDNDLDEN DDVLNGNDDV LNDEEDEELL EEEEDINSPS  60
LLPQTPVAAV SSAVSSVAIP VVPVAVPSAT AVTIAAVSTD ESPPDSKRQR VESAITEKKP  120
APPSQFDESR RLFQRLWTDE DEIELLQGFL DYSTSKMTSN SSSSHHHHHD TALFYDQIKS  180
KLQLDFNKNQ LVEKLRRLKK KYRNVMNKIS SGRGISGLAM NAMPLNFGGS LNFGVGGANG  240
ELMDERWRRQ QILELEVYSK RLELVQDQIK AALEELRSMG G
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04930.28e-37GeBP family protein