PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO61740

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

bHLH

Protein Properties

Length: 462aa MW: 47897.1 Da PI: 6.7027

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO61740	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	36.9	6.5e-12	255	300	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+++Er RR+ri +++ L+el+P+a K +Ka++L + ++Y+k Lq OMO61740 255 HSIAERLRRERIAERMKALQELVPNA-----NKTDKASMLDEIIDYVKFLQ 300 99*********************8.....6****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 462 aa Download sequence
MNSLLNPTQQ IPLQDLQNNG NSNGHQQIQN PQSSFDPTSS HDDFLEQMLS TLPSCSWSDL 60 KSPWDPPKSD ETPDNNNVGF HYDEMLASKL RQHQINGGGG GGSSSPSATA AAMKMMMQQQ 120 MLLAGRAAAA AGGGGGGGLT MPLSLGSSPR QNDIVDGSSF KSPNHQGGGD GAVQVMFNGF 180 GAGSLHGANQ SSNQTQHFHH PQGGAMQAQN FGAAAAAAAA GTVMNQSQAS GSTGGTPAQP 240 KQRVRARRGQ ATDPHSIAER LRRERIAERM KALQELVPNA NKTDKASMLD EIIDYVKFLQ 300 LQVKVLSMSR LGGAAAVAPL VADMPSEGGG DCIQTSANGG GSLQRNSNGN QTSANDTLTV 360 TEHQVAKLME EDMGSAMQYL QGKGLCLMPI SLATAISTAT CHSRNPMINN ANPNNGNSHP 420 LLQTSGEGPS SPSMSVLTVQ SATMGNGGVD GSVKDAASVS KP

Sequence ? help Back to Top

Protein Sequence Length: 462 aa Download sequence

MNSLLNPTQQ IPLQDLQNNG NSNGHQQIQN PQSSFDPTSS HDDFLEQMLS TLPSCSWSDL  60
KSPWDPPKSD ETPDNNNVGF HYDEMLASKL RQHQINGGGG GGSSSPSATA AAMKMMMQQQ  120
MLLAGRAAAA AGGGGGGGLT MPLSLGSSPR QNDIVDGSSF KSPNHQGGGD GAVQVMFNGF  180
GAGSLHGANQ SSNQTQHFHH PQGGAMQAQN FGAAAAAAAA GTVMNQSQAS GSTGGTPAQP  240
KQRVRARRGQ ATDPHSIAER LRRERIAERM KALQELVPNA NKTDKASMLD EIIDYVKFLQ  300
LQVKVLSMSR LGGAAAVAPL VADMPSEGGG DCIQTSANGG GSLQRNSNGN QTSANDTLTV  360
TEHQVAKLME EDMGSAMQYL QGKGLCLMPI SLATAISTAT CHSRNPMINN ANPNNGNSHP  420
LLQTSGEGPS SPSMSVLTVQ SATMGNGGVD GSVKDAASVS KP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	260	265	RLRRER

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24260.1	5e-68	bHLH family protein

Link Out ? help Back to Top
Ensembl	OMO61740