PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO61645

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

FAR1

Protein Properties

Length: 562aa MW: 64522.4 Da PI: 6.8121

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO61645	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	76.9	3.9e-24	59	143	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fYn YAke GF +r+s+s +++++e +++++ Cs g++++++ + ++r+etrtgC a++++++ ++++w++ ++el+HnH+++ OMO61645 59 DFYNVYAKEQGFGIRVSNSWFRSKKKERYRAKLSCSSAGFKKKSEAN-----NPRPETRTGCPAMVVIRLVDSKRWRIVEVELDHNHQVS 143 6***************************************99888.....9********************************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 562 aa Download sequence
MEEVCLNSEP VFDEVDGYEG EGDCSIVEND DGTGAKPSNK EPPSPTVGLE FDSFDEAYDF 60 YNVYAKEQGF GIRVSNSWFR SKKKERYRAK LSCSSAGFKK KSEANNPRPE TRTGCPAMVV 120 IRLVDSKRWR IVEVELDHNH QVSPQLKRFY KSHKKMIIAA RKAQPPPEPV REIHTIKLYR 180 TAVMDAGPNG CSSVSEREGI HPADHSKHLE LKEGDAHAVY NYFCRMKLTN PNFFYLMDLD 240 DDGRLKNVFW ADSRSRAAYG YFCDTVAIDT TCLANKYEIP LISFVGVNHH GHSVLLGCGF 300 LGHESVEYFV WIFRAWVKCM LGHPPQVIVT DQCKPLQIAV SEVFPNAQHC YCMGYIMQRV 360 PEKLGGLKGY EAIKRQLNKA VYNSLKIAEF ETSWADMIKQ HGLGDNKWLQ TLYEDRKQWV 420 PVYLKDTFFA GMIPILENES LNPFFDGYVH KHTSFKEFVD KYDLALHRKH LKEAMADIES 480 RNSCFELKTR CNFEVQLSKV YTKEIFSKFQ SEVEGMYSCF NTKQVSVNGP IITYIVKERV 540 ETEGSEKEEL LNRFNLVDDS LV

Sequence ? help Back to Top

Protein Sequence Length: 562 aa Download sequence

MEEVCLNSEP VFDEVDGYEG EGDCSIVEND DGTGAKPSNK EPPSPTVGLE FDSFDEAYDF  60
YNVYAKEQGF GIRVSNSWFR SKKKERYRAK LSCSSAGFKK KSEANNPRPE TRTGCPAMVV  120
IRLVDSKRWR IVEVELDHNH QVSPQLKRFY KSHKKMIIAA RKAQPPPEPV REIHTIKLYR  180
TAVMDAGPNG CSSVSEREGI HPADHSKHLE LKEGDAHAVY NYFCRMKLTN PNFFYLMDLD  240
DDGRLKNVFW ADSRSRAAYG YFCDTVAIDT TCLANKYEIP LISFVGVNHH GHSVLLGCGF  300
LGHESVEYFV WIFRAWVKCM LGHPPQVIVT DQCKPLQIAV SEVFPNAQHC YCMGYIMQRV  360
PEKLGGLKGY EAIKRQLNKA VYNSLKIAEF ETSWADMIKQ HGLGDNKWLQ TLYEDRKQWV  420
PVYLKDTFFA GMIPILENES LNPFFDGYVH KHTSFKEFVD KYDLALHRKH LKEAMADIES  480
RNSCFELKTR CNFEVQLSKV YTKEIFSKFQ SEVEGMYSCF NTKQVSVNGP IITYIVKERV  540
ETEGSEKEEL LNRFNLVDDS LV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G52520.1	0.0	FAR1 family protein

Link Out ? help Back to Top
Ensembl	OMO61645