PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO61574
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family WRKY
Protein Properties Length: 266aa    MW: 29697.6 Da    PI: 9.213
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO61574genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.24.7e-3095154159
               ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
      WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
               ++Dgy+WrKYGqK+ k+++ pr+Y+rC++a gCpvkkkv+r+ ed++++++tYeg+Hnh+
  OMO61574  95 VKDGYQWRKYGQKVTKDNPSPRAYFRCSMApGCPVKKKVQRCVEDKSFLIVTYEGKHNHD 154
               58***************************99****************************7 PP
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    
MDTLDSKKEK VEGLQAELFQ LQKENEALRL MLEAMRSKYN NVLQAYLRES NGGGLSPIGS  60
YDDYPNKRAR PEVPTLSKAS QVFVKTDLKE NSLIVKDGYQ WRKYGQKVTK DNPSPRAYFR  120
CSMAPGCPVK KKVQRCVEDK SFLIVTYEGK HNHDVNSKPG QSLSSTSTDS SAILHSPTYP  180
VLDINPFRPT VTLDLTLSAS NLENSTLNPP NINGMKDYCS SKDDSNKLLR IEDYVASITK  240
DPNFTVALAA AVARSITEQN RRSPTP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80840.12e-47WRKY family protein