PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO60786

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

FAR1

Protein Properties

Length: 700aa MW: 81039.6 Da PI: 7.8716

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO60786	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	55.8	1.5e-17	25	109	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 +Y++YAk+ GF v k++sk+ ++g+++ tf Csk kr+ e+++ +++ +t+tgCkak+++ + +d +++++ +el+H H l+p OMO60786 25 YYSNYAKQKGFGVMKRTSKRD-DDGNVKYITFACSKTQKRRLESNT----FTSKRVTKTGCKAKIRLILCDDRQFQISVVELDHDHLLSP 109 8*************99997.8999***********99888....888999****************************9975 PP

Sequence ? help Back to Top
Protein Sequence Length: 700 aa Download sequence
MDEEEIVQEP KIGMTFKSSE EAYGYYSNYA KQKGFGVMKR TSKRDDDGNV KYITFACSKT 60 QKRRLESNTF TSKRVTKTGC KAKIRLILCD DRQFQISVVE LDHDHLLSPG EARHFRCKRK 120 RSENVKRSLE INDGAGIGGG KINHSLVEAG GYENVTFNEK DCHSYIEQAK RTRLGVGDAE 180 AVCKYFAKMQ EADPNFFYVV DVDENSRMRN LFWADGRSSA AYEVFGDVVT FDSTYFTDKY 240 DLPFAPFVGV NHHGQSVLFG CGILTSKNTD SFVWLFQSWL NCMSGLHPKA IITNQCKAIQ 300 NAIEIVFPNA RHRLCLWHIM NKVPEKLSGY TDYEEIKQVL QTVVYDSSTE IEFENGWSLM 360 IGSYNLTDNE WLGGLYRERQ RWVPAYVKSS FWAGMSTTQQ SESLNAFFKE YVSHKTTLKQ 420 FVELYDVALK SKVEKENLAD YQSFNSWYEC LSDYDMEKQF QRVYTNAKFK EFQDELKRKF 480 YCHHSLMKTE NSTYEYEVVE DVKVGEKRKD LVFTVCFNDV DCEVNCECRL FEFRGILCRH 540 ALSVLIGRRV NKVPQKYILS RWRKDLKRGY TYIKCSYNPL RQQTERCEKL CKEFQKVAIL 600 AVDSVDKYQL VLKAIEELKA KVANDELIDN QTIQRSASPS QCCADNQTPT TTNKVIRFQG 660 YINQSGSGVY GGSQQTIPNR NFSEENPYTF ESSKDQHPKM

Sequence ? help Back to Top

Protein Sequence Length: 700 aa Download sequence

MDEEEIVQEP KIGMTFKSSE EAYGYYSNYA KQKGFGVMKR TSKRDDDGNV KYITFACSKT  60
QKRRLESNTF TSKRVTKTGC KAKIRLILCD DRQFQISVVE LDHDHLLSPG EARHFRCKRK  120
RSENVKRSLE INDGAGIGGG KINHSLVEAG GYENVTFNEK DCHSYIEQAK RTRLGVGDAE  180
AVCKYFAKMQ EADPNFFYVV DVDENSRMRN LFWADGRSSA AYEVFGDVVT FDSTYFTDKY  240
DLPFAPFVGV NHHGQSVLFG CGILTSKNTD SFVWLFQSWL NCMSGLHPKA IITNQCKAIQ  300
NAIEIVFPNA RHRLCLWHIM NKVPEKLSGY TDYEEIKQVL QTVVYDSSTE IEFENGWSLM  360
IGSYNLTDNE WLGGLYRERQ RWVPAYVKSS FWAGMSTTQQ SESLNAFFKE YVSHKTTLKQ  420
FVELYDVALK SKVEKENLAD YQSFNSWYEC LSDYDMEKQF QRVYTNAKFK EFQDELKRKF  480
YCHHSLMKTE NSTYEYEVVE DVKVGEKRKD LVFTVCFNDV DCEVNCECRL FEFRGILCRH  540
ALSVLIGRRV NKVPQKYILS RWRKDLKRGY TYIKCSYNPL RQQTERCEKL CKEFQKVAIL  600
AVDSVDKYQL VLKAIEELKA KVANDELIDN QTIQRSASPS QCCADNQTPT TTNKVIRFQG  660
YINQSGSGVY GGSQQTIPNR NFSEENPYTF ESSKDQHPKM

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G52520.1	1e-124	FAR1 family protein

Link Out ? help Back to Top
Ensembl	OMO60786