PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | OMO60742 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
|
||||||||
Family | Trihelix | ||||||||
Protein Properties | Length: 350aa MW: 40723.9 Da PI: 8.8632 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 55 | 2.1e-17 | 55 | 136 | 2 | 77 |
trihelix 2 WtkqevlaLiearremeerlrr......gklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsesss 77 Wt qe+l+Li+a++ ++er + +k + +W++v ++++++g+ rs++qC++kw+nl ++ykki++ +++ +++++ OMO60742 55 WTIQETLTLITAKKLDDERRTKpstsspSKPGELRWKWVENYCWDHGCFRSQNQCNDKWDNLLRDYKKIRHYQSQILPQQQQ 136 *************966666664333323468899************************************999988666654 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 350 aa Download sequence |
MSNHPPPPLP STHHHHHHHH HQPPHITTTK ATTQTPATAT TSTTTSNREY RKGNWTIQET 60 LTLITAKKLD DERRTKPSTS SPSKPGELRW KWVENYCWDH GCFRSQNQCN DKWDNLLRDY 120 KKIRHYQSQI LPQQQQQESS DQQQKQHLPS YWSMERHERK LHNLPTNMSP EVFEALSDVL 180 QRRYNTQQQE QQQQQQPQQQ QTSAGSIQQQ QQQQQQKQLP TVSQSSEQLG VRRDQQAPEI 240 EAPVTLSEDQ SDSSETESSE NQGSETKRKR VRKIGTSIMR SASVIAKTLK SCEEKKEKRH 300 QEVMELEQRR LQLEETRNEV NRKGITDIVA AMTNLSGAIQ SLIANHYDQT |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 267 | 298 | KRKRVRKIGTSIMRSASVIAKTLKSCEEKKEK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G35640.1 | 7e-42 | Trihelix family protein |
Link Out ? help Back to Top | |
---|---|
Ensembl | OMO60742 |