PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO60739

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

C2H2

Protein Properties

Length: 588aa MW: 62219.5 Da PI: 9.5464

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO60739	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.2	3e-05	58	80	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C+ C+k F r nL+ H r H OMO60739 58 FICEVCNKGFQREQNLQLHRRGH 80 89*******************88 PP
2	zf-C2H2	13.1	0.00028	134	156	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k++ +s+ k H +t+ OMO60739 134 WKCEKCSKRYAVQSDWKAHSKTC 156 58*****************9998 PP

Sequence ? help Back to Top
Protein Sequence Length: 588 aa Download sequence
MAAASSSTPF FGNREENQNQ MIQQQQSSGA TPTSSTAPPT TAPAQKKKRN QPGTPSKFIC 60 EVCNKGFQRE QNLQLHRRGH NLPWKLRQKT TKEVKRKVYL CPEPTCVHHD PSRALGDLTG 120 IKKHYSRKHG EKKWKCEKCS KRYAVQSDWK AHSKTCGTRE YRCDCGTLFS RRDSFITHRA 180 FCDALAQESA RHPTNLSAMG SHLFGSNHVG LGLSQVGSQI PSLQDQNQPS SNMLRLGSAA 240 GAAKFEHLMP PSNPSSLQNM PTSAFFMADA NQGFHHQDHH QSHHGHGGPF LNKPLHGLMQ 300 LPDLQGNTNN SNASANLFNL GFFSNNSAAS SMSNSENASG GTPNMPNSGF LSPNQFSGGN 360 GGGGQGSAMF STNMGDQVGS GLSSLYSTSM QHENISPHMS ATALLQKAAQ MGSTTSSNTS 420 SLLRGLGSSS SSGTKSNFGS NYGGGGGGGG GGGETLRSQM ENDSNLQGLM NSLANGNSSI 480 FGGGNGGHGQ DGSFGGFSGS GITLDHHQQS SNASYCNVNE AKLHQNLAAR IGGTDKLTLD 540 FLGVGGVVRN MGGGFSQRDQ HGMNMSSLDG AEVKSDQASQ QFGSAKLL

Sequence ? help Back to Top

Protein Sequence Length: 588 aa Download sequence

MAAASSSTPF FGNREENQNQ MIQQQQSSGA TPTSSTAPPT TAPAQKKKRN QPGTPSKFIC  60
EVCNKGFQRE QNLQLHRRGH NLPWKLRQKT TKEVKRKVYL CPEPTCVHHD PSRALGDLTG  120
IKKHYSRKHG EKKWKCEKCS KRYAVQSDWK AHSKTCGTRE YRCDCGTLFS RRDSFITHRA  180
FCDALAQESA RHPTNLSAMG SHLFGSNHVG LGLSQVGSQI PSLQDQNQPS SNMLRLGSAA  240
GAAKFEHLMP PSNPSSLQNM PTSAFFMADA NQGFHHQDHH QSHHGHGGPF LNKPLHGLMQ  300
LPDLQGNTNN SNASANLFNL GFFSNNSAAS SMSNSENASG GTPNMPNSGF LSPNQFSGGN  360
GGGGQGSAMF STNMGDQVGS GLSSLYSTSM QHENISPHMS ATALLQKAAQ MGSTTSSNTS  420
SLLRGLGSSS SSGTKSNFGS NYGGGGGGGG GGGETLRSQM ENDSNLQGLM NSLANGNSSI  480
FGGGNGGHGQ DGSFGGFSGS GITLDHHQQS SNASYCNVNE AKLHQNLAAR IGGTDKLTLD  540
FLGVGGVVRN MGGGFSQRDQ HGMNMSSLDG AEVKSDQASQ QFGSAKLL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02070.1	1e-102	C2H2 family protein

Link Out ? help Back to Top
Ensembl	OMO60739