PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OMO60609 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 236aa MW: 26117.7 Da PI: 8.407 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 61.8 | 1.1e-19 | 77 | 131 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++tkeq + Lee F++n++++ +++e LA++l+L rqV vWFqNrRa+ k OMO60609 77 RKKLRLTKEQSRLLEESFRQNHTLNPKQKEALAMQLKLRPRQVEVWFQNRRARSK 131 78889************************************************98 PP | |||||||
2 | HD-ZIP_I/II | 118.5 | 3.8e-38 | 77 | 165 | 1 | 89 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 +kk+rl+keq++lLEesF+++++L+p++K++la +L+l+prqv+vWFqnrRAR k+kq+E+++e+Lkr++ +l+e+n+rL++eveeLr+ OMO60609 77 RKKLRLTKEQSRLLEESFRQNHTLNPKQKEALAMQLKLRPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGSLTEQNRRLQREVEELRA 165 69*************************************************************************************94 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 236 aa Download sequence |
MAVLPTNCSS NLELTISVAG FSSSPSLPSS GDHGVCTVRD LDINQVPSGG AEDDQWITAS 60 MEDEEESCNN INGVPPRKKL RLTKEQSRLL EESFRQNHTL NPKQKEALAM QLKLRPRQVE 120 VWFQNRRARS KLKQTEMECE YLKRWFGSLT EQNRRLQREV EELRAMKVGP PTVISPHSCE 180 PLPASTLTMC PRCERVTTTA LDKGPTKMTA ATTTATALSS KVGTSALQSR PSSAAC |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 126 | 134 | RRARSKLKQ |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G01430.1 | 6e-80 | HD-ZIP family protein |
Link Out ? help Back to Top | |
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Ensembl | OMO60609 |