PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO60522

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

SBP

Protein Properties

Length: 434aa MW: 47099.1 Da PI: 7.7946

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO60522	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	74.3	2e-23	164	211	1	48
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSS CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsr 48 +CqvegC+ dls+ak+yhr+h+vCe hsk+p+v+vsg+e+rfCqqCsr OMO60522 164 RCQVEGCNLDLSSAKDYHRKHRVCESHSKSPKVIVSGVERRFCQQCSR 211 6**********************************************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 434 aa Download sequence
MFNPTPTEIP RKLRPLEWDA DGDGGMDSGS LYSSGAAAGS GGSGSDLGLA SLSKSSKSAS 60 INSSSMGEVK ASKFTLEAFE AIPDDISNKK EVSKTEPAGT SPTLEASVGS GEPLLSLKLG 120 KRTYFEDVCA GSTAKTSSYS ATPSQSPTPA KRSKANCQST HVPRCQVEGC NLDLSSAKDY 180 HRKHRVCESH SKSPKVIVSG VERRFCQQCS RRRKPQTEAV HFNTSSLSSS SYDGKQQLGF 240 VWNKVPFLHA RSNETFTWEG TFDPKSSQMK GFAPTKGGNV NGQIQLPGNQ LLNSITMRCH 300 DSNRFLPAKG KHNTAEVLNQ GVEESTLTSH MGTTQEFHRA LSLLSNDSWV SCEPKHGSLG 360 YSMQATNPTG MSQPLMNTIS QGFPRASSEN WQMEQQTAES QVHTTLHSDG DNHFQEFQLL 420 KAPYDNGFYS NEMN

Sequence ? help Back to Top

Protein Sequence Length: 434 aa Download sequence

MFNPTPTEIP RKLRPLEWDA DGDGGMDSGS LYSSGAAAGS GGSGSDLGLA SLSKSSKSAS  60
INSSSMGEVK ASKFTLEAFE AIPDDISNKK EVSKTEPAGT SPTLEASVGS GEPLLSLKLG  120
KRTYFEDVCA GSTAKTSSYS ATPSQSPTPA KRSKANCQST HVPRCQVEGC NLDLSSAKDY  180
HRKHRVCESH SKSPKVIVSG VERRFCQQCS RRRKPQTEAV HFNTSSLSSS SYDGKQQLGF  240
VWNKVPFLHA RSNETFTWEG TFDPKSSQMK GFAPTKGGNV NGQIQLPGNQ LLNSITMRCH  300
DSNRFLPAKG KHNTAEVLNQ GVEESTLTSH MGTTQEFHRA LSLLSNDSWV SCEPKHGSLG  360
YSMQATNPTG MSQPLMNTIS QGFPRASSEN WQMEQQTAES QVHTTLHSDG DNHFQEFQLL  420
KAPYDNGFYS NEMN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G43270.1	9e-59	SBP family protein

Link Out ? help Back to Top
Ensembl	OMO60522