PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO59774
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family ERF
Protein Properties Length: 459aa    MW: 51625.4 Da    PI: 5.6931
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO59774genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.91.3e-18223272255
       AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                y+GVr+++ +g+WvAeIr p++   r+r +lg+f+tae+Aa a+++ + kl+g
  OMO59774 223 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEDAALAYDREAFKLRG 272
               59******9.**********955...5*************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 459 aa     Download sequence    
MAAAAKNSGK SKKGVFEETE KMKTRSQDLE IEKGKDLDLG LERRQWKPVL DEASMSQRPL  60
KKIRSPERQD SLQSSVSTSS PPSLTLFPPS SSSSSSNANL PSSRLVFPFA FDASQQPIHF  120
PQQYGNTPTL MPMFRPPPQN QQHMISFNPQ QQQHGFVYPP FYAGDQSSLP PQQQQQQQQL  180
LQYWSDALNL SPRGRMMMMS RLGQDGRHLF RPPALQPINT TKLYRGVRQR HWGKWVAEIR  240
LPRNRTRLWL GTFDTAEDAA LAYDREAFKL RGDNARLNFP ELFLNKDKDA STAPSSTVSS  300
PSTPHESSRP NQKQSENENL QQQEEQEGLN LQSDEKMEMM MPPPAQPDSD SGLGSSEATA  360
ASDEVQMPAE SGSQELVWGD MAEAWFNAIP AGWGPGSPVW DDLDTSNNLL MPSNLPFPNQ  420
TQTQHQEFSD SHLQKQQDSS ASSPSTSCPM KPFFWKDQD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20880.12e-48ERF family protein