PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | OMO59195 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
|
||||||||
Family | MYB_related | ||||||||
Protein Properties | Length: 241aa MW: 27104 Da PI: 4.4724 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 56.2 | 8.1e-18 | 1 | 43 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 +++W++eEd +l++a+k+ G++ W+ Ia++++ gRt++ +k++w+ OMO59195 1 KDSWSEEEDIILIEAHKEIGNK-WAEIAKRLP-GRTENTIKNHWN 43 679*******************.*********.***********8 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 241 aa Download sequence |
KDSWSEEEDI ILIEAHKEIG NKWAEIAKRL PGRTENTIKN HWNATKRRQY SRRKGKETGV 60 SLLQTYIKSV DSSSSSNSTS STSAPKDKGK GKRSLGFDFE PNHDDDDDEH HDADDHDHDQ 120 LESSDYSPIM PKDDDEHQWG VGIYDNNNNN DDDDDENQPM NFSFDHSNAV FGNRSFQSML 180 EQDNHHHVAG SGSGSGSVGS NNNVNNAMDF EMPLMEMDSL METGAGRKEL DLLEMISQGK 240 L |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G27785.1 | 6e-31 | MYB family protein |
Link Out ? help Back to Top | |
---|---|
Ensembl | OMO59195 |