PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO58131
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family SAP
Protein Properties Length: 460aa    MW: 51262.6 Da    PI: 7.2514
Description SAP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO58131genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SAP709.92.7e-21674572454
       SAP   2 ssssssssseseegseggeggdassgesegpsssrqraanevwpePflealatqvaidasrslGrlaaasalanvfqvcstwravsrsdllwqrltrriWr 102
               sssssssss+s+++++g+ +g +++g++egps +r+ra +e+wp Pf+e l +qvaidasr lGrla a a+anvfqvc+twrav rsd lw+rlt+ iW 
  OMO58131   7 SSSSSSSSSSSSSSEDGNGNGARQGGDFEGPSLTRRRANHEIWPGPFVEDLVVQVAIDASRALGRLAVAAAVANVFQVCTTWRAVYRSDPLWHRLTNIIWG 107
               22222222222222233333334449*************************************************************************** PP

       SAP 103 rtkllrdtWreeyiyrhrtarnfrtrrysyvtlqfdpadvdedndadalsCrclalsdkylaaGfadGavrlfdletrlhvstflpqhrdrlGrfsravsG 203
               rt+++++ Wreey++rhrta+nfr rr+ + tl+f p+d   d+++d l+Crcl+lsd++la+GfadG+vrlfdl+tr+hv+tf+p+hrdr+GrfsravsG
  OMO58131 108 RTHRMHASWREEYMFRHRTAQNFRDRRSIHQTLHFVPSD---DDTPDGLTCRCLTLSDTHLACGFADGTVRLFDLATRQHVNTFRPHHRDRFGRFSRAVSG 205
               *************************************84...44689****************************************************** PP

       SAP 204 ivisdsrlvfatldGdihvavidgagaaaarrallGdvvndGalvdfaGsgrWwvGlyaGvpGrafhiWdaeteelvfvGGsltdPeavmGWhmlteltel 304
               ivisdsr++fatldGdih a+idg    ++rral+G+vv+dGalvdf+G+grWwvGlyaGvpGraf+iW+++t elv+v  +ltdPeavmGWhmltelte+
  OMO58131 206 IVISDSRIIFATLDGDIHEAIIDG--GPETRRALMGNVVDDGALVDFTGCGRWWVGLYAGVPGRAFRIWNGNTGELVYVNTTLTDPEAVMGWHMLTELTEA 304
               ************************..469************************************************************************ PP

       SAP 305 vGrvrvteretavaCtslrlvvfdlrnqgvvlreeeerrGlivssldasneayvvvdsrGvatvrrvenleevcrfrvrgaqrg..vlgCvnggyalvyag 403
               vGrvrvt++e+avaCtslr +v+dlrn+   ++++  rrG+iv+s+d++nea+++vdsrG a+vrrv++ ee+crfrv+  qr+  v+gC+n+gyal++ag
  OMO58131 305 VGRVRVTSQESAVACTSLRYMVLDLRNRVFPMHDRPCRRGIIVTSFDTNNEAFMTVDSRGWAIVRRVDSQEELCRFRVNIGQRNvvVMGCMNLGYALICAG 405
               *******************************************************************************977763369************* PP

       SAP 404 gvlrvWeiekkeg.ylyslrervgevnalvaddrhvavsssdgtihlldfga 454
               g++rvW+ie+  g  ly ++e +g+vna+vaddrhva++  d+tihl+dfg 
  OMO58131 406 GIIRVWDIEQGRGqHLYRFSENIGDVNAMVADDRHVAAAGIDTTIHLWDFGP 457
               **********8877************************************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 460 aa     Download sequence    
MSSSSSSSSS SSSSSSSSSS EDGNGNGARQ GGDFEGPSLT RRRANHEIWP GPFVEDLVVQ  60
VAIDASRALG RLAVAAAVAN VFQVCTTWRA VYRSDPLWHR LTNIIWGRTH RMHASWREEY  120
MFRHRTAQNF RDRRSIHQTL HFVPSDDDTP DGLTCRCLTL SDTHLACGFA DGTVRLFDLA  180
TRQHVNTFRP HHRDRFGRFS RAVSGIVISD SRIIFATLDG DIHEAIIDGG PETRRALMGN  240
VVDDGALVDF TGCGRWWVGL YAGVPGRAFR IWNGNTGELV YVNTTLTDPE AVMGWHMLTE  300
LTEAVGRVRV TSQESAVACT SLRYMVLDLR NRVFPMHDRP CRRGIIVTSF DTNNEAFMTV  360
DSRGWAIVRR VDSQEELCRF RVNIGQRNVV VMGCMNLGYA LICAGGIIRV WDIEQGRGQH  420
LYRFSENIGD VNAMVADDRH VAAAGIDTTI HLWDFGPQQG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G35770.11e-180SAP family protein