PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Previous version: v3.0 v4.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO57108

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

C3H

Protein Properties

Length: 947aa MW: 104836 Da PI: 8.8782

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO57108	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	29.4	1.4e-09	181	203	3	26
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 t lC+ f++ G C++G++C+F H+ OMO57108 181 TQLCKEFMA-GRCRRGNQCHFLHD 203 78*****.***********7 PP
2	zf-CCCH	21.8	3.2e-07	244	263	6	26
-SGGGGTS--TTTTT-SS-SS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHg 26 C ++++ G+C++G++C+FaH+ OMO57108 244 CTDYLK-GHCRRGASCRFAHD 263 9***.***********5 PP
3	zf-CCCH	19.3	2.1e-06	306	327	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 ++C++fa+ G C+ G C+F+H OMO57108 306 VPCKYFAA-GNCRNGKYCRFSHH 327 699999.***********5 PP

Sequence ? help Back to Top
Protein Sequence Length: 947 aa Download sequence
MSGSRKRGSK WDSKDERQYS HENVRDSGWP GKAGVAFHDR ESEHEYFSPE VGRNGSKWSS 60 MEASDVIKSK HGLPSRESLS GSRGAQKDDN NVDFVKNWKP ATSWDGDESM RMSPGLDDWR 120 QQSRRHSPKS DWSRSRSFTQ RSRSRSWSRS HSRSRSRSPV HGIRRQSGFH ERTRSKSGVS 180 TQLCKEFMAG RCRRGNQCHF LHDDIQSHED GWDNRQKKAG ASKYFTPNDG KDFLVKSGRS 240 SDCCTDYLKG HCRRGASCRF AHDGAADDVG RGSVNEVSRV RENSKRNRVI SPERDGERET 300 RRSSDVPCKY FAAGNCRNGK YCRFSHHSQA RASPERRSRG DRGGWGQSSV SMDKFRDSAK 360 LRDTDASYNV EKSRNGPKND AVASNEAEKF WAAGPKWSDK DASNDLGKSW PVSKWGDTAY 420 SDGAMSKDTN GKMGTSEPRF SDWSIGQHNY DASGKNSDRD EARKLENSGI ATAASEPRWG 480 EDTLSDTEMS PWNPTSMETE PAHVSHGFKS QTLIDTPVQA HEKNITKEAL GWVREGVAAS 540 QPMSTENSNF QLDHRMRGSS GAALPCDSNV PGRNPAISHI DLNFSSNIPP MQSFDQPGPR 600 SSSLPYPNLN PVGQSQVAIP SGSNEVNMKG MQNNLVFQDE KPSIKLNLGD TTILHGNSGI 660 QSTQNMVSNE QLTQLTNLSA SLAQLLGNGQ QLPLLHAALN PHDAMQVASL ANSGGPTEPV 720 SVTTVQPGED IKLPKQYDPL ADSIESLKKQ ETNAKPLEFS VDPVAQRITG DGIPELSANK 780 LLPSTLVGST NGGEYHNDHS SKREPALDSH MPNQMEPVAN SEVKKENGGD EETRTAQEEN 840 KNGPSENIDA EDKTEEGKKS KDGKGIRAFK FALVEFVKDL LKPTWKEGQI GKEAYKNIVK 900 KVVDKVTASM QGATIPQTPE KIDQYLQFSK PKLTKLVQAY VEKFQKS

Sequence ? help Back to Top

Protein Sequence Length: 947 aa Download sequence

MSGSRKRGSK WDSKDERQYS HENVRDSGWP GKAGVAFHDR ESEHEYFSPE VGRNGSKWSS  60
MEASDVIKSK HGLPSRESLS GSRGAQKDDN NVDFVKNWKP ATSWDGDESM RMSPGLDDWR  120
QQSRRHSPKS DWSRSRSFTQ RSRSRSWSRS HSRSRSRSPV HGIRRQSGFH ERTRSKSGVS  180
TQLCKEFMAG RCRRGNQCHF LHDDIQSHED GWDNRQKKAG ASKYFTPNDG KDFLVKSGRS  240
SDCCTDYLKG HCRRGASCRF AHDGAADDVG RGSVNEVSRV RENSKRNRVI SPERDGERET  300
RRSSDVPCKY FAAGNCRNGK YCRFSHHSQA RASPERRSRG DRGGWGQSSV SMDKFRDSAK  360
LRDTDASYNV EKSRNGPKND AVASNEAEKF WAAGPKWSDK DASNDLGKSW PVSKWGDTAY  420
SDGAMSKDTN GKMGTSEPRF SDWSIGQHNY DASGKNSDRD EARKLENSGI ATAASEPRWG  480
EDTLSDTEMS PWNPTSMETE PAHVSHGFKS QTLIDTPVQA HEKNITKEAL GWVREGVAAS  540
QPMSTENSNF QLDHRMRGSS GAALPCDSNV PGRNPAISHI DLNFSSNIPP MQSFDQPGPR  600
SSSLPYPNLN PVGQSQVAIP SGSNEVNMKG MQNNLVFQDE KPSIKLNLGD TTILHGNSGI  660
QSTQNMVSNE QLTQLTNLSA SLAQLLGNGQ QLPLLHAALN PHDAMQVASL ANSGGPTEPV  720
SVTTVQPGED IKLPKQYDPL ADSIESLKKQ ETNAKPLEFS VDPVAQRITG DGIPELSANK  780
LLPSTLVGST NGGEYHNDHS SKREPALDSH MPNQMEPVAN SEVKKENGGD EETRTAQEEN  840
KNGPSENIDA EDKTEEGKKS KDGKGIRAFK FALVEFVKDL LKPTWKEGQI GKEAYKNIVK  900
KVVDKVTASM QGATIPQTPE KIDQYLQFSK PKLTKLVQAY VEKFQKS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33835.1	5e-18	C3H family protein

Link Out ? help Back to Top
Ensembl	OMO57108