PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO57078
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family FAR1
Protein Properties Length: 308aa    MW: 35262.6 Da    PI: 8.6791
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO57078genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR169.96e-22216303290
      FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 
               fY++YA + GF ++k + +++  +ge++kr+f C ++g++  +  + +k++r+r++ +++Cka+l+++++   ++w+vt+++ +H+Hel 
  OMO57078 216 FYKQYAIRRGFLIKKGRVERK--DGEVKKRDFFCHRYGRQPLKVADPTKKQRNRKSLKCECKAHLHISLNVsLKEWRVTNFVMDHTHELL 303
               9***************98887..9**********************************************9899**************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    
MGGRGKEVVE AEDWSKVNED PLSDTQDRLL EEEFLSGSMH VDLDAENSEV EGDSRGKKRT  60
SDSSERRNVK LSKMDKMNAF LDRWTTALTA KEEAYKAKAL RYKSSSSSGS ADRHSISVCM  120
DLLEKVEGVS STAYNKAIEK FLSADWRQIF VGMSDARRKD WLDSLSDSSG SSNPSSPLEL  180
VGKQKNKNLE ECSTKRDYDE PFVGQVFHSE EEAFVFYKQY AIRRGFLIKK GRVERKDGEV  240
KKRDFFCHRY GRQPLKVADP TKKQRNRKSL KCECKAHLHI SLNVSLKEWR VTNFVMDHTH  300
ELLSPQIS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10240.18e-25FAR1 family protein