PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO57046
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family bHLH
Protein Properties Length: 311aa    MW: 34688.3 Da    PI: 5.7218
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO57046genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.55.8e-093786154
              CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
       HLH  1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
              r++ +  rE+ RRdr+N+ f eL   l ++     +K++Ka+iL  +v+ +k+L
  OMO57046 37 RKVQKADREKLRRDRLNEHFLELGNTLDPD----RPKNDKATILMDTVQILKDL 86
              5677889********************997....79*************99998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    
MDHQWKPNDL SKPLAADLGP SNPESRQRQE MEGKDPRKVQ KADREKLRRD RLNEHFLELG  60
NTLDPDRPKN DKATILMDTV QILKDLSAEV NRLKAECSSL TEESRELTQE KNELREEKAS  120
LKAEIDNLNV QYQQRLRVMF PWTGIDPSVV MAPPYTYPVP LPVPAGPIAM HPAMQPYTFF  180
GNHNTSPIAN PCSTFMPYST ATNPPIEQSS SQHASSSHIS SKRDSKSKSM EDQGGSNRDR  240
FDGSNDVGTE LELKMPGSST NKDFPAGEKK GSQSQKERNM ANGSPSSWYS SSQGFQDSSS  300
NSVDDVSKTN D
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19860.13e-74bHLH family protein