PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO56921
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family ZF-HD
Protein Properties Length: 373aa    MW: 41512.9 Da    PI: 9.0088
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO56921genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer104.94.9e-33145199459
  ZF-HD_dimer   4 vrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 
                  +rY+eC+kNhAas+Ggh++DGCgEfmp  geegt++alkCaAC+CHRnFHR+e + 
     OMO56921 145 IRYRECMKNHAASMGGHVTDGCGEFMPG-GEEGTPEALKCAACECHRNFHRKEING 199
                  79*************************9.999********************9876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    
MELRGQDKEM GMPSSFSYNN NQLNRDSSSS KVSSSTPINS TAERRRDHHA DNTTILNPNP  60
SHQNQTLDHQ NPLYHLHLNP QHQLNKPRRD PDPDPDPVPP QLATTGATVS PTADRSPNHH  120
HQQPPPTSSS SQPPAAAVST TTPLIRYREC MKNHAASMGG HVTDGCGEFM PGGEEGTPEA  180
LKCAACECHR NFHRKEINGE SQYAPPSSYN FSHNPNKNNS RRDMNHMTIH LPPNSHQLHH  240
QQPTATTPFH HQQRFSLGVS TSPSAMAPIA PVMMNFGGGG SGGGPAESSS EDLNMYAGGQ  300
SSAHPQSSKK RFRTKFSQEQ KDKMMEFAEK LGWRIQKQDE QEVQQFCAQT GVKRQVFKVW  360
MHNNKQAMKK KQM
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75240.14e-64ZF-HD family protein