PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO56376
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family bHLH
Protein Properties Length: 281aa    MW: 31644 Da    PI: 8.0038
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO56376genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.76.7e-11107152454
               HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
       HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                h ++Er+RR+++ ++f  L +l+  +     kK +Ka+iL +A++Y+++L
  OMO56376 107 DHVIAERKRREKLSQRFIALSRLMQGL-----KKTDKASILGEAIKYVNQL 152
               6999**********************9.....9****************99 PP
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    
MEQNNLIINA SNSCIINEAN SDQFEDFKRP IKQLKTADSW NSNKSIPPPP KGASSSSSSH  60
IISFDNSNIS SPAISDQYYG LDHHCAMKPK TERPVGSLTR TPLHAQDHVI AERKRREKLS  120
QRFIALSRLM QGLKKTDKAS ILGEAIKYVN QLKERVATLE EQVSKKTMES VIFVKKTQIY  180
ADDETSSSDE NFDNNNSLPE IEARVSDRDV LIRIHCQKNK GCLPNIINEV ENLHLNVLNS  240
NVMTFGHATL DITIVAQMEA EYSMTVKDLV KSLRLALLKF M
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1112117ERKRRE
2113118RKRREK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22760.17e-49bHLH family protein