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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | OMO56360 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
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| Family | HD-ZIP | ||||||||
| Protein Properties | Length: 289aa MW: 31889.8 Da PI: 8.4731 | ||||||||
| Description | HD-ZIP family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | Homeobox | 58.9 | 8.5e-19 | 144 | 198 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
rk+ ++tkeq Lee F+++++++ ++++ LA++l+L rqV vWFqNrRa+ k
OMO56360 144 RKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTK 198
788899***********************************************98 PP
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| 2 | HD-ZIP_I/II | 125.2 | 3e-40 | 144 | 233 | 1 | 91 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91
+kk+rl+keq++lLEesF+++++L+p++K++lar+L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lk+++++l++en+rL+ke +eL+ +l
OMO56360 144 RKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLQKELQELK-AL 233
69*************************************************************************************9.55 PP
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| Sequence ? help Back to Top |
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| Protein Sequence Length: 289 aa Download sequence |
MGLDDACNTG LVLGLGFSST LETPSSKPKK LTSSASFEPS LTLGLSGESY QVVNNSTSGS 60 KNKVDVVING GGGYNYHHHE ETTAVNAAVG GDHLYRQASP HSAVSSFSSG RVKRERDLSY 120 EEVEVEKNNS SRVSDEDEDG VNARKKLRLT KEQSALLEES FKQHSTLNPK QKQALARQLN 180 LRPRQVEVWF QNRRARTKLK QTEVDCEFLK KCCETLTDEN RRLQKELQEL KALKLAQPFY 240 MHMPAATLTM CPSCERIGGV GADGNAKSPF SMASKPHFYN PFTNPSAAC |
| Nucleic Localization Signal ? help Back to Top | |||
|---|---|---|---|
| No. | Start | End | Sequence |
| 1 | 193 | 201 | RRARTKLKQ |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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| Hit ID | E-value | Description | ||||
| AT4G37790.1 | 7e-99 | HD-ZIP family protein | ||||
| Link Out ? help Back to Top | |
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| Ensembl | OMO56360 |
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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