PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO55868
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family Trihelix
Protein Properties Length: 471aa    MW: 54347.9 Da    PI: 5.8563
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO55868genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix95.93.8e-3041125187
  trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
               rW++qe+laL+++r+em+ ++r++  k+plWeevs+km+e g++rs+k+Ckek+en+ k+++++k+g+++r++++  ++++f+qlea
  OMO55868  41 RWPRQETLALLKIRSEMDVAFRDSGIKAPLWEEVSRKMAELGYKRSSKKCKEKFENIYKYHRRTKDGRSGRSNGK--NYRFFEQLEA 125
               8********************************************************************985544..7*******85 PP
2trihelix106.22.3e-33306391187
  trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
               rW+k+ev aLi++r++++ ++++++ k+plWee+s++m++ g+ rs+k+Ckekwen+nk++k++ke++kkr +e+s+tcpyf+ql+a
  OMO55868 306 RWPKDEVEALIRLRTNLDLQYQDNAPKGPLWEEISAAMKKLGYDRSAKRCKEKWENMNKYFKRVKESNKKR-PEDSKTCPYFHQLDA 391
               8*********************************************************************8.99***********85 PP
Sequence ? help Back to Top
Protein Sequence    Length: 471 aa     Download sequence    
MMENSTFPEN NTGADDNVSL ENEEEAGVKN EEIDRNFPGN RWPRQETLAL LKIRSEMDVA  60
FRDSGIKAPL WEEVSRKMAE LGYKRSSKKC KEKFENIYKY HRRTKDGRSG RSNGKNYRFF  120
EQLEALDHQP SLLPPSSETV NISIEPLNVI HDAVPCSIRT PAMNFNETST STTSSSSKES  180
DGTRKKKRKL TEFFERLMRE VMEKQENLQK KFIEAIEKSE QDRIAREEAW KMQELARIKR  240
ERELLVQERS IAAAKDAAVL AFLKKFSDQA TPIQLPETPL PVEKVAERQE NSNGSESYMH  300
HLSSSRWPKD EVEALIRLRT NLDLQYQDNA PKGPLWEEIS AAMKKLGYDR SAKRCKEKWE  360
NMNKYFKRVK ESNKKRPEDS KTCPYFHQLD ALYREKSKKA DGSVNSGYEL KPEELLMHMM  420
SAQEERPQQE SATEDGESEN ADQNQVENGN TEEGDAYQIV VNDPSPMAII G
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18492KRSSKKCKE
2185190KKKRKL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76890.25e-67Trihelix family protein