PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO55261
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family Trihelix
Protein Properties Length: 262aa    MW: 30164.1 Da    PI: 9.1586
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO55261genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix62.59.6e-2058128160
  trihelix   1 rWtkqevlaLiearremeerlrrgk...........lkkplWeevskkmrergferspkqCkekwenlnkr 60 
               +Wt+++v++Li+a+++++e+   ++           +kk++W++vsk+m+erg+++sp+qC++k+++lnkr
  OMO55261  58 KWTDKMVRLLITAVSYIGEDAVGDCgggmrrkfavlQKKGKWKSVSKVMAERGYHVSPQQCEDKFNDLNKR 128
               7**************999998887777788888999*********************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    
MGTMQNCDQT ISMTDYNKGE RGKSSVSDED EPSFTEDGVD GHNDGSKGKK GSPWQRVKWT  60
DKMVRLLITA VSYIGEDAVG DCGGGMRRKF AVLQKKGKWK SVSKVMAERG YHVSPQQCED  120
KFNDLNKRGT YGMLGGSAKR SRQGQIHEDA CFQHSLNSQD CNKSPFSYPP ITQADINQVP  180
PESSRAAWLQ KQWVESRSVQ LEEQKLQIQV EMLELEKQRF KWQRFSKKRD RELEKMRMEN  240
ERMKLENERM ALELKRKELA AD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21200.11e-56Trihelix family protein