PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO54390

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

FAR1

Protein Properties

Length: 1473aa MW: 169924 Da PI: 6.5642

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO54390	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	67.3	3.9e-21	131	214	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 ++Yn YAke+GF +r+++s ++++++e + ++C++eg+++ ++ + ++r+etrtgC a++++++ ++++w+v++++leHnH + OMO54390 131 NYYNCYAKELGFAIRVKSSWTKRNSKEKRGAVLCCNCEGFKTIKEAN-----SRRKETRTGCLAMIRLRLVESNRWRVDEVKLEHNHLF 214 69**************************************99888.....8999*****************************76 PP
2	FAR1	66.9	5.2e-21	862	945	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 ++Yn YAkevGF+vr+++s +++++e + + ++Cs +g+++ ++ + r r+etrtgC a+++++ ++++w+v ++ leHnH l OMO54390 862 NYYNCYAKEVGFRVRVKNSWFKRNSREKYGAVLCCSSQGFKRIKDVN-----RLRKETRTGCPAMIRMRVVDSKRWRVLEVTLEHNHLL 945 69***************************************9988.....99*******************************76 PP

Sequence ? help Back to Top
Protein Sequence Length: 1473 aa Download sequence
MTGDSSFSPT DHQALSSSPN LHLTIEEGSQ NSEQLFDEDG NELEMEGDDL EIEGDDVDID 60 SNGLGIDGNG LDIESNGLQN DCDQMLEIED NHESNGVDTT AVDLENGMSQ VKDYPPPLVG 120 MEFESYDDAY NYYNCYAKEL GFAIRVKSSW TKRNSKEKRG AVLCCNCEGF KTIKEANSRR 180 KETRTGCLAM IRLRLVESNR WRVDEVKLEH NHLFDHERAQ NCKSHKKMDA VAKRKVEPTV 240 DVEVQTIKLY RTPVVDPVGY GSSNSLEGEF SENVDRSKRL KLKKGDSQII YNYFSRTQLT 300 HPNFVYLMDL NDEGYLRNVF WIDSRSRAAY GYFGDVVVID TTCLSNKYEI PLVAFVGVNH 360 HGQSILLGCG LLADDTFGTY VWLFRAWLTC MSGRPPQTII TDHCRAMQNA IAEVFPRAHH 420 RLHLSHVVQS ILENLGELQE SGVFQIMLNR TIYDSLKVDE FEMGWDDLIR RFGIVDHAWL 480 RSLYEERERW APVYVKDTFF AGLCTFRNGE SMSSFFDGYV HKQTSLEEFF DIYELVLQKK 540 HKKEAVNDLE SRDSSPMLKT RCYYELQLSK LYTNEIFRRF QDEVVMMSSC LSITQVHANG 600 PVVTYMIKER EGEGDPRDIR NFDVIYDKAG LEVRCICSCF NFNGYLCRHG LCVLESNGVE 660 EIPFQYILSR WRKDFKRLYI PDLGSNNVDI ANPVQWFDHL YRRSMQVVEE GMTSQDHYMV 720 AWQAFKESLN KVRLVADKHC PSSLRNFSRS LTRRPPSILI STSAPVTPFF NNLRLRSAAA 780 SRRPGRRRSR HTQMEMEEEE AHHLSHEQLA EGKCEGDSIS ELVCEPTELD LDGQNGLLEE 840 GKKEFVAPAV GMEFESYDDA YNYYNCYAKE VGFRVRVKNS WFKRNSREKY GAVLCCSSQG 900 FKRIKDVNRL RKETRTGCPA MIRMRVVDSK RWRVLEVTLE HNHLLGGKIY KSIKKMGSGT 960 KRKTQSSSDA EVQTVKLYRA LVIDAGGNGN SNSNAREVRN FSEHPNQLNL KKGDSQAIYN 1020 YLCRMQLTNP NFFYLMDFSD EGRLRNAFWV DSRCRASCGY FGDVIYIDNT CLSNRYETPL 1080 AALVGINHHG QTVLLGCGLL AGETAESYTW LFKAWLTCVS GQCPQTIITD RCKALQNAIT 1140 EVFPKSNHRF SLSHIMKQVP EKLGGLRNYD AIRKTFVKAV YETLKVIEFE AAWGFMIQHF 1200 GVTDHEWLRG LYEDRAQWAP VYLKETYFAG MSAARPGESL SPFFDKYVHK QTPLKEFLDK 1260 YELALQKKHK EETLADIESR NSSPTLRTRC SFELQLSKLY TREIFKRFQF EVEEMYSCFS 1320 TTQLHVDGPI IIFLVKERVL AEGNRREIRD YEVLYNRTAG EVRCICSCFN FCGYLCRHAL 1380 CVLNFNGVEE IPSKYILSRW KKDYKRLYVP DQGSNNVDVV DRIQWFNQLY RSALQVVEEG 1440 AISLDHYKVS LQAFEESLKR VHDIEEKQEQ HTL

Sequence ? help Back to Top

Protein Sequence Length: 1473 aa Download sequence

MTGDSSFSPT DHQALSSSPN LHLTIEEGSQ NSEQLFDEDG NELEMEGDDL EIEGDDVDID  60
SNGLGIDGNG LDIESNGLQN DCDQMLEIED NHESNGVDTT AVDLENGMSQ VKDYPPPLVG  120
MEFESYDDAY NYYNCYAKEL GFAIRVKSSW TKRNSKEKRG AVLCCNCEGF KTIKEANSRR  180
KETRTGCLAM IRLRLVESNR WRVDEVKLEH NHLFDHERAQ NCKSHKKMDA VAKRKVEPTV  240
DVEVQTIKLY RTPVVDPVGY GSSNSLEGEF SENVDRSKRL KLKKGDSQII YNYFSRTQLT  300
HPNFVYLMDL NDEGYLRNVF WIDSRSRAAY GYFGDVVVID TTCLSNKYEI PLVAFVGVNH  360
HGQSILLGCG LLADDTFGTY VWLFRAWLTC MSGRPPQTII TDHCRAMQNA IAEVFPRAHH  420
RLHLSHVVQS ILENLGELQE SGVFQIMLNR TIYDSLKVDE FEMGWDDLIR RFGIVDHAWL  480
RSLYEERERW APVYVKDTFF AGLCTFRNGE SMSSFFDGYV HKQTSLEEFF DIYELVLQKK  540
HKKEAVNDLE SRDSSPMLKT RCYYELQLSK LYTNEIFRRF QDEVVMMSSC LSITQVHANG  600
PVVTYMIKER EGEGDPRDIR NFDVIYDKAG LEVRCICSCF NFNGYLCRHG LCVLESNGVE  660
EIPFQYILSR WRKDFKRLYI PDLGSNNVDI ANPVQWFDHL YRRSMQVVEE GMTSQDHYMV  720
AWQAFKESLN KVRLVADKHC PSSLRNFSRS LTRRPPSILI STSAPVTPFF NNLRLRSAAA  780
SRRPGRRRSR HTQMEMEEEE AHHLSHEQLA EGKCEGDSIS ELVCEPTELD LDGQNGLLEE  840
GKKEFVAPAV GMEFESYDDA YNYYNCYAKE VGFRVRVKNS WFKRNSREKY GAVLCCSSQG  900
FKRIKDVNRL RKETRTGCPA MIRMRVVDSK RWRVLEVTLE HNHLLGGKIY KSIKKMGSGT  960
KRKTQSSSDA EVQTVKLYRA LVIDAGGNGN SNSNAREVRN FSEHPNQLNL KKGDSQAIYN  1020
YLCRMQLTNP NFFYLMDFSD EGRLRNAFWV DSRCRASCGY FGDVIYIDNT CLSNRYETPL  1080
AALVGINHHG QTVLLGCGLL AGETAESYTW LFKAWLTCVS GQCPQTIITD RCKALQNAIT  1140
EVFPKSNHRF SLSHIMKQVP EKLGGLRNYD AIRKTFVKAV YETLKVIEFE AAWGFMIQHF  1200
GVTDHEWLRG LYEDRAQWAP VYLKETYFAG MSAARPGESL SPFFDKYVHK QTPLKEFLDK  1260
YELALQKKHK EETLADIESR NSSPTLRTRC SFELQLSKLY TREIFKRFQF EVEEMYSCFS  1320
TTQLHVDGPI IIFLVKERVL AEGNRREIRD YEVLYNRTAG EVRCICSCFN FCGYLCRHAL  1380
CVLNFNGVEE IPSKYILSRW KKDYKRLYVP DQGSNNVDVV DRIQWFNQLY RSALQVVEEG  1440
AISLDHYKVS LQAFEESLKR VHDIEEKQEQ HTL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G52520.1	0.0	FAR1 family protein

Link Out ? help Back to Top
Ensembl	OMO54390