PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO53811

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

FAR1

Protein Properties

Length: 781aa MW: 89973.6 Da PI: 8.2438

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO53811	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	66.3	7.9e-21	71	146	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fY +YA +vGF++r+ + ++s+++g++ +r++vCskeg++ + +rtgC a ++v+++++gkw+v++++++HnHel OMO53811 71 EFYGQYAIRVGFRIRTGQLYRSRTDGSVSSRRYVCSKEGFQLN--------------SRTGCPAFIRVQRRDSGKWVVDQIQKDHNHELG 146 6*************************************876..............589**************************95 PP
2	FAR1	66.5	7.2e-21	225	299	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 ++Y++YA+ +GF+vr+ + +sk++g+it+r+fvCskeg++++ +r+gC a +++k++++g+w+v++l+++HnH+l OMO53811 225 EYYQAYAEVTGFRVRIGQLFRSKNDGSITSRRFVCSKEGFQHP--------------SRVGCGAFMRIKRKDSGTWMVDRLNKDHNHDL 299 69************************************999..............4899************************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 781 aa Download sequence
MGIDSGSSQF TDLKSSDINT NSEECMNAMV VKAYPVGMVH MNTNGHVEDE GESGMEPYLG 60 LEFDSADDAR EFYGQYAIRV GFRIRTGQLY RSRTDGSVSS RRYVCSKEGF QLNSRTGCPA 120 FIRVQRRDSG KWVVDQIQKD HNHELGPAGE NSSPILQPKP PVVSKSLVEV LRRPKVKFPE 180 KLENGGPSLS GIINLKRPKR GGDGGQSRAE PYTGLEFHTS NEAYEYYQAY AEVTGFRVRI 240 GQLFRSKNDG SITSRRFVCS KEGFQHPSRV GCGAFMRIKR KDSGTWMVDR LNKDHNHDLE 300 GHMVCQKKVS TAPKKFIEEE ARGLFSRDLV EVTNGKLNIS QGNKIGSDWY SVLLEYFQAR 360 QAEDTGFFYS VEVDNGNCRS VFWADGRSRF SCSQFGDVII FDTSYRMSNY VVPFATFVGV 420 NHHKQPVLLG SALIANESEE SFTWLFQTWF RAMSRCHPQS IIADQDIAIQ QAIAKVFPGT 480 HHRFSLWQIR ARERENFRSL PNEFRYEYEK CIYQSQTTVE FNASWNSLIN KYCLKENVWL 540 KHMYEKRESW VPLYLQGKFF AGIPTGESIE SFFGTQVNGQ TPLREFISRY EQGLEQRREE 600 ERKEDFNSFN LQAFLQTKEP LEEQCKRLYT FTIFKIFQDE LLQSYSYIGI KTYEEGTISR 660 FVVRRENDKH AVTFSAVNLS VNCSCQMFES SGVLCRHVLK VFKLLDIREL PPQYIVYRWM 720 RNAEYRIFCG AESGISSQEQ KSFMVWSLRE TACKYVEWGA ASVEKYKLAY EILREGGKKL 780 C

Sequence ? help Back to Top

Protein Sequence Length: 781 aa Download sequence

MGIDSGSSQF TDLKSSDINT NSEECMNAMV VKAYPVGMVH MNTNGHVEDE GESGMEPYLG  60
LEFDSADDAR EFYGQYAIRV GFRIRTGQLY RSRTDGSVSS RRYVCSKEGF QLNSRTGCPA  120
FIRVQRRDSG KWVVDQIQKD HNHELGPAGE NSSPILQPKP PVVSKSLVEV LRRPKVKFPE  180
KLENGGPSLS GIINLKRPKR GGDGGQSRAE PYTGLEFHTS NEAYEYYQAY AEVTGFRVRI  240
GQLFRSKNDG SITSRRFVCS KEGFQHPSRV GCGAFMRIKR KDSGTWMVDR LNKDHNHDLE  300
GHMVCQKKVS TAPKKFIEEE ARGLFSRDLV EVTNGKLNIS QGNKIGSDWY SVLLEYFQAR  360
QAEDTGFFYS VEVDNGNCRS VFWADGRSRF SCSQFGDVII FDTSYRMSNY VVPFATFVGV  420
NHHKQPVLLG SALIANESEE SFTWLFQTWF RAMSRCHPQS IIADQDIAIQ QAIAKVFPGT  480
HHRFSLWQIR ARERENFRSL PNEFRYEYEK CIYQSQTTVE FNASWNSLIN KYCLKENVWL  540
KHMYEKRESW VPLYLQGKFF AGIPTGESIE SFFGTQVNGQ TPLREFISRY EQGLEQRREE  600
ERKEDFNSFN LQAFLQTKEP LEEQCKRLYT FTIFKIFQDE LLQSYSYIGI KTYEEGTISR  660
FVVRRENDKH AVTFSAVNLS VNCSCQMFES SGVLCRHVLK VFKLLDIREL PPQYIVYRWM  720
RNAEYRIFCG AESGISSQEQ KSFMVWSLRE TACKYVEWGA ASVEKYKLAY EILREGGKKL  780
C

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G06250.1	0.0	FAR1 family protein

Link Out ? help Back to Top
Ensembl	OMO53811