PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO53755

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

SBP

Protein Properties

Length: 772aa MW: 86681.8 Da PI: 6.2561

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO53755	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	119.5	1.7e-37	138	213	1	76
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkk 76 +Cqv+gCead+se+k yhrrh+vC ++++++vl++g+++r+CqqC++fh ls+fDe+krsCrr+L++hn+rrr+k OMO53755 138 RCQVPGCEADISELKGYHRRHRVCLRCANSSTVLIDGETKRYCQQCGKFHLLSDFDEGKRSCRRKLERHNNRRRRK 213 6***********************************************************************9997 PP

Sequence ? help Back to Top
Protein Sequence Length: 772 aa Download sequence
MEQAPSPPTQ PPRGSHRSKD PQMDVHFPVP EADPTSSVWD WGDILDFTVD ENFSLSFDDE 60 NLAPSPLEVP PLDPGAVPGP DRVRKRDPRL TCSNFLAGRV PCACPELDEQ IEKLEEEEAG 120 APGKKRARTG RVGSGTSRCQ VPGCEADISE LKGYHRRHRV CLRCANSSTV LIDGETKRYC 180 QQCGKFHLLS DFDEGKRSCR RKLERHNNRR RRKPAGSKTA GNKESQEAVQ SEDIPCDSEA 240 GKDDLSLSGQ VAEEEPTFES EDGRVSTHCS VPAVQSVNND SVVTFIDAET DGGKDDSKFS 300 LSTSYCDNKT AYSSMCPTGR ISFKLYDWNP AEFPRRLRHQ IFQWLANMPV ELEGYIRPGC 360 TILTVFISMP KNMWAKVSEN PMTYIHDFVF TPGRMLYGRG FMTIYLNNMI FRTMKDGTSM 420 VKIDVEMKAP KLHYVHPACF EAGKPMEFVA CGSNLLQAKF RFLVSFAGRY LSYDYFVASS 480 NVQHEEDSPG CDHRLFKIRV PQTEPDIFGP AFIEVENQSG LSNFIPVLIG DKEICSEMKS 540 IQQRLDVSLF GERSKFSATV SLLEACKASS LRQKAYSELL LDIAWLLREP KLENIQETMA 600 SSQIQRFNCL LSFLIDNKLT VILKKVLKNL KIVVEKIGFN GTNDSDIRLL QKHMEYARDI 660 LSNEVQEGES PDLDERTNCK LQTTIASTTD CETVPLLKSE IIMNVNLSKE CPRKSCSPIF 720 VTPALRSRPA VFLIATAAVC LGMCAVIFHP NKVGEFAITI RRCLFDRVLD VE

Sequence ? help Back to Top

Protein Sequence Length: 772 aa Download sequence

MEQAPSPPTQ PPRGSHRSKD PQMDVHFPVP EADPTSSVWD WGDILDFTVD ENFSLSFDDE  60
NLAPSPLEVP PLDPGAVPGP DRVRKRDPRL TCSNFLAGRV PCACPELDEQ IEKLEEEEAG  120
APGKKRARTG RVGSGTSRCQ VPGCEADISE LKGYHRRHRV CLRCANSSTV LIDGETKRYC  180
QQCGKFHLLS DFDEGKRSCR RKLERHNNRR RRKPAGSKTA GNKESQEAVQ SEDIPCDSEA  240
GKDDLSLSGQ VAEEEPTFES EDGRVSTHCS VPAVQSVNND SVVTFIDAET DGGKDDSKFS  300
LSTSYCDNKT AYSSMCPTGR ISFKLYDWNP AEFPRRLRHQ IFQWLANMPV ELEGYIRPGC  360
TILTVFISMP KNMWAKVSEN PMTYIHDFVF TPGRMLYGRG FMTIYLNNMI FRTMKDGTSM  420
VKIDVEMKAP KLHYVHPACF EAGKPMEFVA CGSNLLQAKF RFLVSFAGRY LSYDYFVASS  480
NVQHEEDSPG CDHRLFKIRV PQTEPDIFGP AFIEVENQSG LSNFIPVLIG DKEICSEMKS  540
IQQRLDVSLF GERSKFSATV SLLEACKASS LRQKAYSELL LDIAWLLREP KLENIQETMA  600
SSQIQRFNCL LSFLIDNKLT VILKKVLKNL KIVVEKIGFN GTNDSDIRLL QKHMEYARDI  660
LSNEVQEGES PDLDERTNCK LQTTIASTTD CETVPLLKSE IIMNVNLSKE CPRKSCSPIF  720
VTPALRSRPA VFLIATAAVC LGMCAVIFHP NKVGEFAITI RRCLFDRVLD VE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	200	212	RRKLERHNNRRRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18830.2	0.0	SBP family protein

Link Out ? help Back to Top
Ensembl	OMO53755