PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO53579

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

FAR1

Protein Properties

Length: 678aa MW: 77937.6 Da PI: 6.4705

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO53579	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	65	2e-20	59	152	1	90
FAR1 1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHela 90 +fY+++Ak++GFs+r+++++ + + +t+r+f+C + g+++ + +++ k +r+r+++r+gC+a +++ k+ +w+vt +++ HnHel OMO53579 59 EFYCSFAKQCGFSIRRHRTRGKdGVGRGVTRRDFTCHRGGYPQMKMSEDGKMQRNRKSSRCGCQAYMRIVKRAdfdVPEWRVTGFSNIHNHELL 152 6*************9998874556679***************9***************98887676789***********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 678 aa Download sequence
MSEGTSMVME SSENGTDLSQ DDTGTIVEMP EDTILSHQTS VNLIPFIGQR FVSQDAAYEF 60 YCSFAKQCGF SIRRHRTRGK DGVGRGVTRR DFTCHRGGYP QMKMSEDGKM QRNRKSSRCG 120 CQAYMRIVKR ADFDVPEWRV TGFSNIHNHE LLKANEVRLL PAYCTITPDD KARICMFAKA 180 GMSVRQMLRL MELEKGVKLG CLPFTEIDVR NLLQSFRNVN RDYDAIDLIS MCKKLKDENP 240 HFQYEFKLDS HNRLEHIAWS YASSVQLYET FGDAVVFDTT HRMDAYDMLL GIWVGVDNHG 300 LTSFFGCVLL RDENMQSFSW ALKTFLGFMK GKAPQTLLTD QNMWLKEAIA IEMPETRHAF 360 CIWHIISKFS DWFSLLLGSR YDEWKSDFYR LYSLDLIEDF EEEWREMMEK YGLHENKHII 420 SLYALRNFWA LPFLRPYFFA GLTSPCQSET INAFIQRILS AQSELDRFVE QVGEIVEFND 480 RAGSKQKIQR KMQKVCLKTG SPIESHAATV LTPYAFDQYL PSRWRINTST NPIRNSTREH 540 SEKIQLLESM ASTLIAESME TEERLDVACE QTAILLSRIK ELPRPTHSAN DIVYNCPSDL 600 ILPEVEDTDG IVQSFTIGTS HESLGSGKLK ERRTRDGIDI SRKRKHFSGS CCMHFGHDSS 660 ECPLMGGDSL NTDAQGYL

Sequence ? help Back to Top

Protein Sequence Length: 678 aa Download sequence

MSEGTSMVME SSENGTDLSQ DDTGTIVEMP EDTILSHQTS VNLIPFIGQR FVSQDAAYEF  60
YCSFAKQCGF SIRRHRTRGK DGVGRGVTRR DFTCHRGGYP QMKMSEDGKM QRNRKSSRCG  120
CQAYMRIVKR ADFDVPEWRV TGFSNIHNHE LLKANEVRLL PAYCTITPDD KARICMFAKA  180
GMSVRQMLRL MELEKGVKLG CLPFTEIDVR NLLQSFRNVN RDYDAIDLIS MCKKLKDENP  240
HFQYEFKLDS HNRLEHIAWS YASSVQLYET FGDAVVFDTT HRMDAYDMLL GIWVGVDNHG  300
LTSFFGCVLL RDENMQSFSW ALKTFLGFMK GKAPQTLLTD QNMWLKEAIA IEMPETRHAF  360
CIWHIISKFS DWFSLLLGSR YDEWKSDFYR LYSLDLIEDF EEEWREMMEK YGLHENKHII  420
SLYALRNFWA LPFLRPYFFA GLTSPCQSET INAFIQRILS AQSELDRFVE QVGEIVEFND  480
RAGSKQKIQR KMQKVCLKTG SPIESHAATV LTPYAFDQYL PSRWRINTST NPIRNSTREH  540
SEKIQLLESM ASTLIAESME TEERLDVACE QTAILLSRIK ELPRPTHSAN DIVYNCPSDL  600
ILPEVEDTDG IVQSFTIGTS HESLGSGKLK ERRTRDGIDI SRKRKHFSGS CCMHFGHDSS  660
ECPLMGGDSL NTDAQGYL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10240.1	0.0	FAR1 family protein

Link Out ? help Back to Top
Ensembl	OMO53579