PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO53176

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

C2H2

Protein Properties

Length: 499aa MW: 56036.4 Da PI: 6.8756

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO53176	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12	0.00065	109	128	2	21
EETTTTEEESSHHHHHHHHH CS zf-C2H2 2 kCpdCgksFsrksnLkrHir 21 +C+ Cgk F ++ L H++ OMO53176 109 VCKECGKGFQSWKALFGHMK 128 6******************7 PP
2	zf-C2H2	10.8	0.0016	411	433	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp+C ++F++ L H r+H OMO53176 411 HECPICLRVFPSGQALGGHKRSH 433 79******************999 PP

Sequence ? help Back to Top
Protein Sequence Length: 499 aa Download sequence
MFSKEEDIQE LKHVCKFCSK SFPCGRSLGG HMRSHMANNN NNNNNSAETK DKHKKKLVSV 60 INTNDEANTE TELEEAGIDG GYVLRENPRK TWRLADLRQE DNTSVHDKVC KECGKGFQSW 120 KALFGHMKCH SSEKERASAS INNNNNSLEL EEQDSLVMDS QSDNETAAPS KGRRSKRRTR 180 YILGTANSST FSLTNLASSS NSMSEINIEQ EQEEVALSLM MLSRDVGYWG GFNSVAESSD 240 NNSVFLEPKT EVMIRLSKSK NEVSVDESFK DEKNSEVELS KNSVKQKLNS SKRKLHYSYD 300 HHQELKSDVL DSEFCKDPHK RSKFECITCN KIFHSYQALG GHRASHKKIK GCFASRIDST 360 DNSIEDNELS PDPTADSKLV KSISNDQDNS DDHKAEIQIS YGEVIKKSKG HECPICLRVF 420 PSGQALGGHK RSHLVAEARL ENQRIVIQKP VPEIRDFLDL NLPAPVEEEA SSSVHVGFKP 480 WWVGSCSHKH EALVGLISN

Sequence ? help Back to Top

Protein Sequence Length: 499 aa Download sequence

MFSKEEDIQE LKHVCKFCSK SFPCGRSLGG HMRSHMANNN NNNNNSAETK DKHKKKLVSV  60
INTNDEANTE TELEEAGIDG GYVLRENPRK TWRLADLRQE DNTSVHDKVC KECGKGFQSW  120
KALFGHMKCH SSEKERASAS INNNNNSLEL EEQDSLVMDS QSDNETAAPS KGRRSKRRTR  180
YILGTANSST FSLTNLASSS NSMSEINIEQ EQEEVALSLM MLSRDVGYWG GFNSVAESSD  240
NNSVFLEPKT EVMIRLSKSK NEVSVDESFK DEKNSEVELS KNSVKQKLNS SKRKLHYSYD  300
HHQELKSDVL DSEFCKDPHK RSKFECITCN KIFHSYQALG GHRASHKKIK GCFASRIDST  360
DNSIEDNELS PDPTADSKLV KSISNDQDNS DDHKAEIQIS YGEVIKKSKG HECPICLRVF  420
PSGQALGGHK RSHLVAEARL ENQRIVIQKP VPEIRDFLDL NLPAPVEEEA SSSVHVGFKP  480
WWVGSCSHKH EALVGLISN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G26610.1	5e-42	C2H2 family protein

Link Out ? help Back to Top
Ensembl	OMO53176