PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO52914
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family FAR1
Protein Properties Length: 288aa    MW: 33038.6 Da    PI: 5.6858
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO52914genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR184.91.2e-2678168190
      FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerr..traetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
               +fY eYAk++GF++r+++ ++s +n  i+ r+fvCs+eg+r+ ++++++  r   +r+ tr gCka++++  +++gkw+vtk++ +HnH+l+
  OMO52914  78 DFYFEYAKRTGFTIRTNRIRHSLKNMAIIGRDFVCSREGFRAAKHTHRK-DRVlpPRPITREGCKAMIRLAAREEGKWVVTKFVRDHNHKLM 168
               6*****************************************9998822.222459**********************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    
MAGTAGQLDL SESDRSSEDE TAVNIAEYEG IEPELLQGHS DVMNNEFISL EQSGGAFDLG  60
NLEPYLGMTF QALDDARDFY FEYAKRTGFT IRTNRIRHSL KNMAIIGRDF VCSREGFRAA  120
KHTHRKDRVL PPRPITREGC KAMIRLAARE EGKWVVTKFV RDHNHKLMTH CKFPGELPTI  180
NMLSELNCLS RKGLPCSNTF SSAKEAQLKV SLELMPLEVD LKVDLLQEEK DKKIQDLYNE  240
LQREKERTAA YRQQLQMILK DLEEHAEFMS IRVEDIVDSL KKVELQDV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G59470.26e-37FAR1 family protein