PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO49660
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family WRKY
Protein Properties Length: 356aa    MW: 38979.4 Da    PI: 7.727
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO49660genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY106.31.6e-33197254259
               --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
      WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
               +Dgy+WrKYGqK vk+s++prsYYrCts++C vkk+vers +dp+vv++tYeg+Hnh+
  OMO49660 197 EDGYRWRKYGQKAVKNSPYPRSYYRCTSQKCGVKKRVERSFQDPSVVITTYEGQHNHH 254
               8********************************************************7 PP
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    
MSSNERKDHL HHNYDPFQGF NRSSNTFPFF DDNNNNNNPS IYSNQLQSDA SPVTQNFQGF  60
DPSFMSFTDY LHGSAVDYNS FSKAFDMSCS SISDHVLSPQ IDVDSGNSSK KIGATADNNN  120
DVTENPSTPN SSVSSSSNEG AADEGSTKSS KKDKLPKASE DGGEDDKSKK VNKPKKEKRK  180
REPRVAFLTK SEIDHLEDGY RWRKYGQKAV KNSPYPRSYY RCTSQKCGVK KRVERSFQDP  240
SVVITTYEGQ HNHHLPATLR GNAAMFSPSS LLASSAAAMG PGFPHDFLSQ LLPPPSTASN  300
NPAAAGGGGG ASNNTTNSNL FYQSLAPPNQ QQQQLQVPDY GLLQDLVSSF THRQAP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18170.17e-49WRKY family protein