PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO49430

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

FAR1

Protein Properties

Length: 818aa MW: 92437.2 Da PI: 6.9262

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO49430	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	50.2	8.7e-16	66	140	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 fY++YA+++GFs+ + + ++sk +g i++ +f Cs+e +++++ ++ C+a++++++++ +kw tk++++HnH+++ OMO49430 66 FYDAYARQLGFSTHVGQFTRSKPDGPIVTWDFACSREVFKRKNVES--------------CNAMFRIERKEGDKWIATKFVEDHNHSMV 140 9*************************************999877..............************************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 818 aa Download sequence
MDVGGGKRDS VAGMNVDSNK GGDDNWNLIE NSPEIEVVVN QDDDGGGGSK PCVGMEFETE 60 DAGKTFYDAY ARQLGFSTHV GQFTRSKPDG PIVTWDFACS REVFKRKNVE SCNAMFRIER 120 KEGDKWIATK FVEDHNHSMV TPSKVHYLRP RRHFAGATKS APETLDSSND VYVSMDGNHV 180 SYDATRVRNA SVESNRFVRN MGPAGYLRPS SQRRTLGRDA QNLLNYFKKM QAENPGFYYA 240 IQLDDDNRMT NVFWADARSR SAYNYFGDAV TFDTMYRPNQ YQIPFAPFTG INHHGQMVLF 300 GCALLLDESE SSFAWLFKTW LSAMNDRPPV SITTDQDRAI KAAVSQVFPE TRHCICKWHI 360 LREGQERLAH IYLAHPSFYG KLYSCINFSE TIEDFESSWT ALLDKYDLHK NEWLKAVYNA 420 RKQWAPVYFR GTFFAALSSN QGVSSFFDGY VNQQTTIPLF FKQYERALEH SLEKEIEADY 480 DTICTTAVLK TPSPMEQQAA NLYTKKVFSK FQEELVETFV YTANKIDGDG IVSKYRVAKY 540 EHDHKAYFVM LNVSEMKASC SCQMFEYSGI LCRHILTVFT VTNVLTLPSQ YILKRWTRNA 600 KSWVGLDEQH ADPQGIETLT TRFNNLCQEA FKLAEEGAVA PETYNVAISA LREAGKKIAF 660 VKKNVAKVTP PSSHSHEDGS KKTTSPVSEM VPSLWPWQDA VPPRFNLNDV GAPLADLNQP 720 SMVPVSIHRD GGHPDSTAVL TCFKSMTWVI ENKNAMEAGK AAVINLKLHD YGKNPAGETE 780 VQFNLTRATL EPMLRSMAYI SQQLSTPVNR VAVINLKV

Sequence ? help Back to Top

Protein Sequence Length: 818 aa Download sequence

MDVGGGKRDS VAGMNVDSNK GGDDNWNLIE NSPEIEVVVN QDDDGGGGSK PCVGMEFETE  60
DAGKTFYDAY ARQLGFSTHV GQFTRSKPDG PIVTWDFACS REVFKRKNVE SCNAMFRIER  120
KEGDKWIATK FVEDHNHSMV TPSKVHYLRP RRHFAGATKS APETLDSSND VYVSMDGNHV  180
SYDATRVRNA SVESNRFVRN MGPAGYLRPS SQRRTLGRDA QNLLNYFKKM QAENPGFYYA  240
IQLDDDNRMT NVFWADARSR SAYNYFGDAV TFDTMYRPNQ YQIPFAPFTG INHHGQMVLF  300
GCALLLDESE SSFAWLFKTW LSAMNDRPPV SITTDQDRAI KAAVSQVFPE TRHCICKWHI  360
LREGQERLAH IYLAHPSFYG KLYSCINFSE TIEDFESSWT ALLDKYDLHK NEWLKAVYNA  420
RKQWAPVYFR GTFFAALSSN QGVSSFFDGY VNQQTTIPLF FKQYERALEH SLEKEIEADY  480
DTICTTAVLK TPSPMEQQAA NLYTKKVFSK FQEELVETFV YTANKIDGDG IVSKYRVAKY  540
EHDHKAYFVM LNVSEMKASC SCQMFEYSGI LCRHILTVFT VTNVLTLPSQ YILKRWTRNA  600
KSWVGLDEQH ADPQGIETLT TRFNNLCQEA FKLAEEGAVA PETYNVAISA LREAGKKIAF  660
VKKNVAKVTP PSSHSHEDGS KKTTSPVSEM VPSLWPWQDA VPPRFNLNDV GAPLADLNQP  720
SMVPVSIHRD GGHPDSTAVL TCFKSMTWVI ENKNAMEAGK AAVINLKLHD YGKNPAGETE  780
VQFNLTRATL EPMLRSMAYI SQQLSTPVNR VAVINLKV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G27110.2	0.0	FAR1 family protein

Link Out ? help Back to Top
Ensembl	OMO49430