PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GBG89689.1
Organism
Chara braunii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Charophyceae; Charales; Characeae; Chara
Family Trihelix
Protein Properties Length: 406aa    MW: 44307 Da    PI: 6.3621
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GBG89689.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix25.72.9e-08202276269
    trihelix   2 WtkqevlaLiearremeerlr.......rgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegek 69 
                 W+ +e l+L++a+r+ + +++       r   ++ ++++  k++ e g+ r+ +   +kw+nl ++ykk+++ e 
  GBG89689.1 202 WSVKEMLKLVQAKRDQQAHFEgmahnygRMHNREWKLQDLQKRLLEVGVDRTTNNIGKKWDNLFQQYKKVQRYET 276
                 **************666666633222225669999999*******************************998776 PP
Sequence ? help Back to Top
Protein Sequence    Length: 406 aa     Download sequence    
MCSTARLAGT YDPILYRNLP PNEQPLPPDP EEQWVDDLSR TLSLGSGSTQ DWMGGHCGQR  60
GVVTSPHSFS ALLEDDVGGG DTEIVDLNFG LSSGSGLAAT HTRTFNLVPS VTIGRSSVHL  120
SARMRVASGE LNAEDSQRAS DYESTDVICE DEVEDADDME IRPLLVRGKG RGGGVRQEKA  180
VSRGGRRSKG PPSEKAGKHP SWSVKEMLKL VQAKRDQQAH FEGMAHNYGR MHNREWKLQD  240
LQKRLLEVGV DRTTNNIGKK WDNLFQQYKK VQRYETASGG KNFFNLTPSL RTEEGVNCRM  300
EERVYDEIDA MSKGNKTIYP NNVADTSARG GLQMPRSPSV AGESAARGDG GDGNDDDGGS  360
ARESGFSAGS TGGNCKSKDM HQQTFEAIAE VMDKHGTTRR PTRLTG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35640.13e-07Trihelix family protein