PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GBG88605.1
Organism
Chara braunii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Charophyceae; Charales; Characeae; Chara
Family Trihelix
Protein Properties Length: 439aa    MW: 47268.5 Da    PI: 7.202
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GBG88605.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix33.41.2e-10219283158
    trihelix   1 rWtkqevlaLiearr.......emeerlrrgklkkplWeevskkmrergferspkqCkekwenln 58 
                 rW ++e+ +L ++r+       +  e+++r++ k++ W+ v++ m e+g+ r+  qCk+k++++ 
  GBG88605.1 219 RWGEEETAVLCRIRNevkqlmgDETEAFGRARIKAGFWKMVAQCMNEKGLIRTHDQCKNKFNQVD 283
                 8**************444444444444445679****************************9875 PP
Sequence ? help Back to Top
Protein Sequence    Length: 439 aa     Download sequence    
MFNVGTGDEN GLREQLWRRA MAMAGLFVVF DVQHGQIQLN GFVVSPTPSS HDIGNHDAPP  60
CLSPVTPTSG GQTVSLSHEI GCTTPPPHMG VMDRPEGQPR CSNSGSSSGG AQGVEQEPDS  120
EYIINRLIRD VEGGTFPGSN FGVDAGDRQQ RPPPTPPAGA SPCEGDNLGR ASGSPNPIAD  180
KSGTQRIPSP AAKRGGAQTQ ARGGSSRGSP SPAEKNLERW GEEETAVLCR IRNEVKQLMG  240
DETEAFGRAR IKAGFWKMVA QCMNEKGLIR THDQCKNKFN QVDFYRRLNF KGAARGDGHD  300
ATYGGDEDPG GIDGRASQSD GTRSTPFDTT VGKRKRAATN ARDSSLGAIT GAMRDHTVAL  360
TRSDRECMKM RCDATPDVAR QQEVQRETMQ QDIASRERVV NIMGDRVEKV YMAIADAICS  420
LRGPDRRPRD GASHLNVPD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G33240.13e-07Trihelix family protein