PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GBG88477.1

Organism

Chara braunii

Taxonomic ID

69332

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Charophyceae; Charales; Characeae; Chara

Family

Trihelix

Protein Properties

Length: 581aa MW: 63116 Da PI: 6.3348

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GBG88477.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	34.6	5.1e-11	326	401	2	70
trihelix 2 WtkqevlaLiearremeerlrrg.......klkkplWeevskkmrergferspkqCkekwenlnkrykkikegekk 70 W+ + aLi+a+ + +l+ k ++ +W +v +++++ g+ r++++C +kw+nl +++kk+ + ++ GBG88477.1 326 WSVDDMIALIRAKHDHSAHLQGMgtafacmKPREWKWLDVEQRLKKVGVDREAERCGKKWDNLMQQFKKVHHFQGL 401 999999******7777777421223322688899999****************************9887665 PP

Sequence ? help Back to Top
Protein Sequence Length: 581 aa Download sequence
MEGRQGMCRS AGDQGGGQRP GQSPSRSSRP SERAGYTHLP QHLQPLSDTS DEEVEDRRSW 60 SVPLGSGSTQ EWAATELCGS RDGGYGLSYT QLLQQGLSGD EGDGCVNQSF GLCSGRSSAA 120 SRTVIVDNHP DDDGGQVTSV AWSSKSPTPV RYASGNNRDP PRPQCRTSSM SRGASARPLW 180 MQSLSPLSAS STAARRRGEC GGPDCGIDDA GDARDGREVW AEHRRTLHPR WEESITEGVQ 240 RLRGGNHEND SDAPAVGAND QEWNDDDGEG GEEDAGHVSP ERQSSMGGRG GKTRVCARNG 300 RRAKKAVGKG SDAEADDDAE EGRQFWSVDD MIALIRAKHD HSAHLQGMGT AFACMKPREW 360 KWLDVEQRLK KVGVDREAER CGKKWDNLMQ QFKKVHHFQG LSGKQDFFQF SGKERLSKGF 420 NFNMDRAVYD EILGSTAKSH TINPKNVTDT SAPGGVRLPS STSADHESVG DGDAAAGHED 480 DDDGSTRGSS QTTGSVVGFG KRKSTRQQTC EAQTDCMEKH GALVASTMES NSKQQCSIQI 540 RQREALEAEV EVQKKHNVAS DEVRKLMCHA LLEIAKAIRE R

Sequence ? help Back to Top

Protein Sequence Length: 581 aa Download sequence

MEGRQGMCRS AGDQGGGQRP GQSPSRSSRP SERAGYTHLP QHLQPLSDTS DEEVEDRRSW  60
SVPLGSGSTQ EWAATELCGS RDGGYGLSYT QLLQQGLSGD EGDGCVNQSF GLCSGRSSAA  120
SRTVIVDNHP DDDGGQVTSV AWSSKSPTPV RYASGNNRDP PRPQCRTSSM SRGASARPLW  180
MQSLSPLSAS STAARRRGEC GGPDCGIDDA GDARDGREVW AEHRRTLHPR WEESITEGVQ  240
RLRGGNHEND SDAPAVGAND QEWNDDDGEG GEEDAGHVSP ERQSSMGGRG GKTRVCARNG  300
RRAKKAVGKG SDAEADDDAE EGRQFWSVDD MIALIRAKHD HSAHLQGMGT AFACMKPREW  360
KWLDVEQRLK KVGVDREAER CGKKWDNLMQ QFKKVHHFQG LSGKQDFFQF SGKERLSKGF  420
NFNMDRAVYD EILGSTAKSH TINPKNVTDT SAPGGVRLPS STSADHESVG DGDAAAGHED  480
DDDGSTRGSS QTTGSVVGFG KRKSTRQQTC EAQTDCMEKH GALVASTMES NSKQQCSIQI  540
RQREALEAEV EVQKKHNVAS DEVRKLMCHA LLEIAKAIRE R

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35640.1	2e-07	Trihelix family protein