PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GBG87322.1

Organism

Chara braunii

Taxonomic ID

69332

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Charophyceae; Charales; Characeae; Chara

Family

Trihelix

Protein Properties

Length: 494aa MW: 53148.9 Da PI: 8.2371

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GBG87322.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	39.7	1.3e-12	352	426	2	69
trihelix 2 WtkqevlaLiearr.......emeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegek 69 W+ + + aLi+a+r m++++ r k ++ +W +v+ + ++ g+ r++ +C +kw+nl +++kk+ + ++ GBG87322.1 352 WSVDDIIALIRAKRdqdvhlqGMGHAYARMKPRECKWLDVATRFKKVGVDRKADRCGKKWDNLMQQFKKVHHFQG 426 99**********55555555555555789************************************988666 PP

Sequence ? help Back to Top
Protein Sequence Length: 494 aa Download sequence
MADVFRRLPL LVLVVLLLLL LVVFHVCILG SVLRRGRRRR SLKNDARMEG RQAISGSTGE 60 HGGRQSGHSP SNSSSPSERS GYAHLPPHLQ PLPDTPDEEA DDRRSRTVPL GSGSTPEWAA 120 TELFGIREGG NGQSYTELLQ QGLSDHDGDG GVNLSFGLGS GRSAAVSRTV VVNPHPNDDG 180 GDVTAVLRTS RSPAPLREAS GNNTDPPRQQ FRSPSVCRGC RLGECGETAR GIADVGDARD 240 GREVWAEQRR LLRSGREESI TQGVQQLRVG EDGHDGEEAV ADARAPDWND NGVEGGEDDA 300 GYVSPSKQAA AMGGRGGKTK SCAGNGCRGK RAAGKASDAE GDVDGEGGRH FWSVDDIIAL 360 IRAKRDQDVH LQGMGHAYAR MKPRECKWLD VATRFKKVGV DRKADRCGKK WDNLMQQFKK 420 VHHFQGLSGK QDFFQLSGKD RTSKGFSFNM DRAVYDEILG STAKNHTINP KNVADTGAQG 480 GVRLSSASSA DPES

Sequence ? help Back to Top

Protein Sequence Length: 494 aa Download sequence

MADVFRRLPL LVLVVLLLLL LVVFHVCILG SVLRRGRRRR SLKNDARMEG RQAISGSTGE  60
HGGRQSGHSP SNSSSPSERS GYAHLPPHLQ PLPDTPDEEA DDRRSRTVPL GSGSTPEWAA  120
TELFGIREGG NGQSYTELLQ QGLSDHDGDG GVNLSFGLGS GRSAAVSRTV VVNPHPNDDG  180
GDVTAVLRTS RSPAPLREAS GNNTDPPRQQ FRSPSVCRGC RLGECGETAR GIADVGDARD  240
GREVWAEQRR LLRSGREESI TQGVQQLRVG EDGHDGEEAV ADARAPDWND NGVEGGEDDA  300
GYVSPSKQAA AMGGRGGKTK SCAGNGCRGK RAAGKASDAE GDVDGEGGRH FWSVDDIIAL  360
IRAKRDQDVH LQGMGHAYAR MKPRECKWLD VATRFKKVGV DRKADRCGKK WDNLMQQFKK  420
VHHFQGLSGK QDFFQLSGKD RTSKGFSFNM DRAVYDEILG STAKNHTINP KNVADTGAQG  480
GVRLSSASSA DPES

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35640.1	9e-10	Trihelix family protein