PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GBG85372.1
Organism
Chara braunii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Charophyceae; Charales; Characeae; Chara
Family Trihelix
Protein Properties Length: 352aa    MW: 38857.5 Da    PI: 5.5607
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GBG85372.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix30.97.3e-10182256269
    trihelix   2 WtkqevlaLiearr.......emeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegek 69 
                 W+   + aL++a+r        m++++ r k ++ +We+v  +++   ++r+ + C +kw+nl +++kk+ + ++
  GBG85372.1 182 WSVGDTIALVRAKRvqymyitGMGTSFARIKTREWKWEDVQVRLQTMDITREGVDCGKKWDNLMQQFKKVHKFQN 256
                 88899999*****999999999***********************************************988665 PP
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    
MQRLISASNC SAAAEQRQRA LGSSIPTQMG IARTTRTLVC AGRETVVYLN RSAKVGGIEM  60
CCRRTSEEDT VRMNVRSGCA CHLCRDADLG LLEDGNDRRI RVRELHVDEG DETAFDELLG  120
CDDVDGDDDC NSDDLPDIRP LGRKVTNGSA SAKRGPAPKN RRNKKMDDDT GRSDGEDDRN  180
LWSVGDTIAL VRAKRVQYMY ITGMGTSFAR IKTREWKWED VQVRLQTMDI TREGVDCGKK  240
WDNLMQQFKK VHKFQNLSGG KDYFKLASKA RRSEGFNFVM MDRSVYDEME AMTKGDHTIH  300
LKNLADTGAV GEVQMPAGAG AGGETMASEG GGEAADEEQG STKDSTFILN LG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35640.15e-06Trihelix family protein