PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GBG85338.1

Organism

Chara braunii

Taxonomic ID

69332

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Charophyceae; Charales; Characeae; Chara

Family

Trihelix

Protein Properties

Length: 590aa MW: 64269.2 Da PI: 6.1479

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GBG85338.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	47.3	5.5e-15	306	381	1	69
trihelix 1 rWtkqevlaLiearremeerlrrgk.......lkkplWeevskkmrergferspkqCkekwenlnkrykkikegek 69 rW ++e+ +L ++r+e+++ ++++ k + W+ v+++m+e g++rsp qCk+k+++++ y+++k +e+ GBG85338.1 306 RWGEEETALLCRIRNEVKQLMGEETeaygrarIKSGFWKMVAQRMKENGVNRSPDQCKNKFNQVHDFYRRLKGHER 381 8************8888888643333334399***********************************99887 PP

Sequence ? help Back to Top
Protein Sequence Length: 590 aa Download sequence
MTVEGDHEGL SCIQDWGCSE SQVPPAQGHG TFTVQAVDQQ AQWSHDAYGT RAHFSQSSAS 60 QTFADPNGGT GPQVGLSPVP HEAVGHCPTV AGTSAHHRSY GPSGDPFSSP LQPVGGFRFG 120 VGGEDEYALR EQVRRRAMAM AGAFEFDLQH SPACFSRELF SGQHRNSDSL PPDGQPVTPI 180 SPQAPTPQTR CHSSSGGDGG QRQQGGEDYI INRLIRNVEA GDLSSQDCGA GDGQRVGQPS 240 LSPFVGASPS EGDNLGASGG SPNVPAGVNA PQPIPSPPVS SSGTSIPARH ETSAGRPSRA 300 DKNSDRWGEE ETALLCRIRN EVKQLMGEET EAYGRARIKS GFWKMVAQRM KENGVNRSPD 360 QCKNKFNQVH DFYRRLKGHE RWSGLPNYWD MNASTRKVCN VDFIIRRSWY DAINSAEKDT 420 DSITLSELRD PGTEHERREE EEGAREQDGQ AELPTDEDGS GAAGGPSVNE GTRSTAFDPT 480 LSKRKRAVTN ARESSMRAII GAMRDHTVAL TRSDRDCARM RGDATRDVAQ QQAELQRDLM 540 QQDIASRERT VKEYGDRVEN SYMAMADAIR SLRAPHNNRR AHRRSSDDSE

Sequence ? help Back to Top

Protein Sequence Length: 590 aa Download sequence

MTVEGDHEGL SCIQDWGCSE SQVPPAQGHG TFTVQAVDQQ AQWSHDAYGT RAHFSQSSAS  60
QTFADPNGGT GPQVGLSPVP HEAVGHCPTV AGTSAHHRSY GPSGDPFSSP LQPVGGFRFG  120
VGGEDEYALR EQVRRRAMAM AGAFEFDLQH SPACFSRELF SGQHRNSDSL PPDGQPVTPI  180
SPQAPTPQTR CHSSSGGDGG QRQQGGEDYI INRLIRNVEA GDLSSQDCGA GDGQRVGQPS  240
LSPFVGASPS EGDNLGASGG SPNVPAGVNA PQPIPSPPVS SSGTSIPARH ETSAGRPSRA  300
DKNSDRWGEE ETALLCRIRN EVKQLMGEET EAYGRARIKS GFWKMVAQRM KENGVNRSPD  360
QCKNKFNQVH DFYRRLKGHE RWSGLPNYWD MNASTRKVCN VDFIIRRSWY DAINSAEKDT  420
DSITLSELRD PGTEHERREE EEGAREQDGQ AELPTDEDGS GAAGGPSVNE GTRSTAFDPT  480
LSKRKRAVTN ARESSMRAII GAMRDHTVAL TRSDRDCARM RGDATRDVAQ QQAELQRDLM  540
QQDIASRERT VKEYGDRVEN SYMAMADAIR SLRAPHNNRR AHRRSSDDSE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G33240.1	4e-08	Trihelix family protein