PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GBG85167.1

Organism

Chara braunii

Taxonomic ID

69332

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Charophyceae; Charales; Characeae; Chara

Family

Trihelix

Protein Properties

Length: 539aa MW: 59230.6 Da PI: 7.9218

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GBG85167.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	37.4	6.7e-12	88	138	19	69
trihelix 19 erlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegek 69 ++++r + k+ +We+++k+m+ g+ r++ C +kw+nl ++ykki++ ++ GBG85167.1 88 HNYGRMRTKEWKWEDIAKRMANAGCPREADDCMKKWDNLFQKYKKIQRFQN 138 677888999************************************987665 PP

Sequence ? help Back to Top
Protein Sequence Length: 539 aa Download sequence
MPNPAPTPDD ELRGDPACRP VVRLQPTVEN ITEGVSNMRA HSDGVDENGG AGDDADDGYR 60 EDVEAVDDDG DAPIRPLGKD MHLVGLGHNY GRMRTKEWKW EDIAKRMANA GCPREADDCM 120 KKWDNLFQKY KKIQRFQNAS GEADFFRLSN EERKDHNFKF RMERALYNEI HGGMLGNHTI 180 FPPNIADTGN PDGEQLPRRG AGGGESVGSE AASDRWAEER SSPRESDNNV GNGARSMKRK 240 NTRQQALESI ADVMDRHGAL MSSTMEFSSK RQCSVLTRQC DILEQEVAVQ KEHYAASDET 300 SYAVVKACWC TPPALCASSS SENSSPSPRA VVFRKRHNRL CSRPPRLQSS VVVVESRSSF 360 RIKQPALRST TWTSTVKFIN SYPSLCPCAA IDGRRHIFPL QLSRWQIMAP RRGGGGQARG 420 KKRDAVTERT AGGSGGGRHT TRTKRSRQDA SSVSGAHLDG DGWGRPNDGE GENETGYAAM 480 EEVARMEHDQ ITHVTTPQGR HREDAGTGTF AATPRVQKAL GERGSGGAVT PRVQQAVGD

Sequence ? help Back to Top

Protein Sequence Length: 539 aa Download sequence

MPNPAPTPDD ELRGDPACRP VVRLQPTVEN ITEGVSNMRA HSDGVDENGG AGDDADDGYR  60
EDVEAVDDDG DAPIRPLGKD MHLVGLGHNY GRMRTKEWKW EDIAKRMANA GCPREADDCM  120
KKWDNLFQKY KKIQRFQNAS GEADFFRLSN EERKDHNFKF RMERALYNEI HGGMLGNHTI  180
FPPNIADTGN PDGEQLPRRG AGGGESVGSE AASDRWAEER SSPRESDNNV GNGARSMKRK  240
NTRQQALESI ADVMDRHGAL MSSTMEFSSK RQCSVLTRQC DILEQEVAVQ KEHYAASDET  300
SYAVVKACWC TPPALCASSS SENSSPSPRA VVFRKRHNRL CSRPPRLQSS VVVVESRSSF  360
RIKQPALRST TWTSTVKFIN SYPSLCPCAA IDGRRHIFPL QLSRWQIMAP RRGGGGQARG  420
KKRDAVTERT AGGSGGGRHT TRTKRSRQDA SSVSGAHLDG DGWGRPNDGE GENETGYAAM  480
EEVARMEHDQ ITHVTTPQGR HREDAGTGTF AATPRVQKAL GERGSGGAVT PRVQQAVGD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35640.1	1e-07	Trihelix family protein