PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GBG85096.1

Organism

Chara braunii

Taxonomic ID

69332

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Charophyceae; Charales; Characeae; Chara

Family

Trihelix

Protein Properties

Length: 1001aa MW: 107641 Da PI: 6.7205

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GBG85096.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	43.6	7.6e-14	357	428	2	66
trihelix 2 WtkqevlaLiearremeerlr.......rgklkkplWeevskkmrergferspkqCkekwenlnkrykkike 66 W+ +++ aLi+a+r+ + +++ r k ++ +W++v+++++ g+ r++++C +kw+nl +++kk+ + GBG85096.1 357 WSVEHIIALIRAKRDQDAHMQgmghaytRMKPREWKWQDVAQRLKNVGVDRNAEKCGKKWDNLMQQFKKVHH 428 9***********7777777444433366899**********************************976 PP

Sequence ? help Back to Top
Protein Sequence Length: 1001 aa Download sequence
MADVFRRLPL LLLVVLLLLL VVLFRVCILG NVPPRRRKTR SSMKDARMEA RQAIPRSGGE 60 QVGGRRCGGS LSTVGRASQR VGYDALPPHL QPLPGSSDEE EEVERRPQTV SLGSASTQEW 120 TATELCGTGG GVYKESFTEL LRPSLGEDEG DGRVNLSFGL STRRSTTPSR TVLVRPHPGE 180 EAGQLTVVDR SARTRALASE TAGANRNSCH LPCLWRRKWR EAVASESTAG PTSWMLVMVA 240 TGGRCGGTCD GITGCGERNT SHGGVERLHV GDRENEKETD DPPAEADDDN DDDDDNDVDC 300 GEGGDGHASP SFQSDMAGKG GKSKPSGRNA RPRAKKGQGK GSGGEGDGDA EEKRNFWSVE 360 HIIALIRAKR DQDAHMQGMG HAYTRMKPRE WKWQDVAQRL KNVGVDRNAE KCGKKWDNLM 420 QQFKKVHHFQ SPSGGADFFQ LSSKERASKG FNFMMDRTVY DEIEGSTGMN HTIHPKNVAD 480 TGASGGVRPP SASYVDPESV ADGEGGAGRE NDEEGSTRGS SQTTGTPDGS GKRKSTRQQT 540 FEALTECMEK HGELLASTME SASKRQCFIQ VRQCEALEAE VEVQRKHYAA SDEVNKLMCH 600 ALLEIAKVIR AFVGSTMSSR GGGRGKAALK QIVEGAAPAK KGRHQAKRQR KVVQAVPAGS 660 ARDVVEEAVV EEEITNDEDD FEDDDDETLQ KKTRVSSAEG VRINEGGEGT PSARRGSGVA 720 AANQPVFVDV ARDVARRDVG GRTKEGAASH ETAQRVLAPV NCPRTPAADM AGSSQAAVEG 780 GTLRSPTVAA RGGAVAVPGE AVEVPKGGDG VAAGEDDEAL VHRLRGQRSA THAMDAAAKL 840 WEDDNRFWNN TAVGTTKAMG GCRVSYERLK GMAEAMRYLL AATMWIMRMA GDDPRSHYDA 900 WVFVQLTAKT TLLASMNRQF DAHRHITQSA QVMTNKLGRP PPTFAPPPVY IPDWASKCGV 960 TFSHDATLAS PMEAKRLDWL GTGPPEDAAA AAEGDDKGEG G

Sequence ? help Back to Top

Protein Sequence Length: 1001 aa Download sequence

MADVFRRLPL LLLVVLLLLL VVLFRVCILG NVPPRRRKTR SSMKDARMEA RQAIPRSGGE  60
QVGGRRCGGS LSTVGRASQR VGYDALPPHL QPLPGSSDEE EEVERRPQTV SLGSASTQEW  120
TATELCGTGG GVYKESFTEL LRPSLGEDEG DGRVNLSFGL STRRSTTPSR TVLVRPHPGE  180
EAGQLTVVDR SARTRALASE TAGANRNSCH LPCLWRRKWR EAVASESTAG PTSWMLVMVA  240
TGGRCGGTCD GITGCGERNT SHGGVERLHV GDRENEKETD DPPAEADDDN DDDDDNDVDC  300
GEGGDGHASP SFQSDMAGKG GKSKPSGRNA RPRAKKGQGK GSGGEGDGDA EEKRNFWSVE  360
HIIALIRAKR DQDAHMQGMG HAYTRMKPRE WKWQDVAQRL KNVGVDRNAE KCGKKWDNLM  420
QQFKKVHHFQ SPSGGADFFQ LSSKERASKG FNFMMDRTVY DEIEGSTGMN HTIHPKNVAD  480
TGASGGVRPP SASYVDPESV ADGEGGAGRE NDEEGSTRGS SQTTGTPDGS GKRKSTRQQT  540
FEALTECMEK HGELLASTME SASKRQCFIQ VRQCEALEAE VEVQRKHYAA SDEVNKLMCH  600
ALLEIAKVIR AFVGSTMSSR GGGRGKAALK QIVEGAAPAK KGRHQAKRQR KVVQAVPAGS  660
ARDVVEEAVV EEEITNDEDD FEDDDDETLQ KKTRVSSAEG VRINEGGEGT PSARRGSGVA  720
AANQPVFVDV ARDVARRDVG GRTKEGAASH ETAQRVLAPV NCPRTPAADM AGSSQAAVEG  780
GTLRSPTVAA RGGAVAVPGE AVEVPKGGDG VAAGEDDEAL VHRLRGQRSA THAMDAAAKL  840
WEDDNRFWNN TAVGTTKAMG GCRVSYERLK GMAEAMRYLL AATMWIMRMA GDDPRSHYDA  900
WVFVQLTAKT TLLASMNRQF DAHRHITQSA QVMTNKLGRP PPTFAPPPVY IPDWASKCGV  960
TFSHDATLAS PMEAKRLDWL GTGPPEDAAA AAEGDDKGEG G

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	34	38	PRRRK
2	330	338	ARPRAKKGQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35640.1	5e-09	Trihelix family protein