PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GBG85048.1

Organism

Chara braunii

Taxonomic ID

69332

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Charophyceae; Charales; Characeae; Chara

Family

C3H

Protein Properties

Length: 498aa MW: 52127.7 Da PI: 8.2092

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GBG85048.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	18.2	4.4e-06	44	60	4	21
---SGGGGTS--TTTTT- CS zf-CCCH 4 elCrffartGtCkyGdrC 21 + C++f++ G Ck+Gd+C GBG85048.1 44 KVCPYFLQ-GKCKFGDSC 60 68****.******* PP
2	zf-CCCH	21.3	4.7e-07	173	193	4	25
---SGGGGTS--TTTTT-SS-S CS zf-CCCH 4 elCrffartGtCkyGdrCkFaH 25 ++C f+++ G C+ G+ C+F H GBG85048.1 173 RPCVFWLK-GDCRKGEACNFLH 193 79****.*********** PP

Sequence ? help Back to Top
Protein Sequence Length: 498 aa Download sequence
MSSMETDDSW VRGGVGNRYR PGRGGLGGRG GGIGGGPGGM GGVKVCPYFL QGKCKFGDSC 60 AWFHPAMGDM GMNGGGGGGG LGGRIGGLGP GRGAGGGGEM PASGSLSGSK RGSLGRVDER 120 GGGGGSPQTS FVASQAVESG REDKRGRGDG GRGWGRGGAR YQRSRRPPRQ QDRPCVFWLK 180 GDCRKGEACN FLHTHTTATD VEMMTSLTGH EKAILGITLP VGMGQLYTGS KDRSVRVWDC 240 TSGQCTGNVD TGGSVGALLS EGVWLFVGLP DEIRCWNMQT SSQHSLSGHK GQVHCLAVSS 300 ECLFSGAQDA VILVWKFNAG LGVFENVASF RGHEGQVVAL QVAGERLYSG SVDNTIKVWD 360 LKTGLCTQTL GGHKAAVLGL LCWQQYLLSC SLDGSIKVWG ASSTGALELT FSHPEEDFAT 420 NTADREGALA MCGTMDTANR PVLLCSYNDN TVRLYDLPSF TERGALFSKE EVRALAVGPG 480 GLIFTGDSCG VVKVWRWK

Sequence ? help Back to Top

Protein Sequence Length: 498 aa Download sequence

MSSMETDDSW VRGGVGNRYR PGRGGLGGRG GGIGGGPGGM GGVKVCPYFL QGKCKFGDSC  60
AWFHPAMGDM GMNGGGGGGG LGGRIGGLGP GRGAGGGGEM PASGSLSGSK RGSLGRVDER  120
GGGGGSPQTS FVASQAVESG REDKRGRGDG GRGWGRGGAR YQRSRRPPRQ QDRPCVFWLK  180
GDCRKGEACN FLHTHTTATD VEMMTSLTGH EKAILGITLP VGMGQLYTGS KDRSVRVWDC  240
TSGQCTGNVD TGGSVGALLS EGVWLFVGLP DEIRCWNMQT SSQHSLSGHK GQVHCLAVSS  300
ECLFSGAQDA VILVWKFNAG LGVFENVASF RGHEGQVVAL QVAGERLYSG SVDNTIKVWD  360
LKTGLCTQTL GGHKAAVLGL LCWQQYLLSC SLDGSIKVWG ASSTGALELT FSHPEEDFAT  420
NTADREGALA MCGTMDTANR PVLLCSYNDN TVRLYDLPSF TERGALFSKE EVRALAVGPG  480
GLIFTGDSCG VVKVWRWK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	147	157	RGDGGRGWGRG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G51980.1	1e-121	C3H family protein